Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   VDS58_RS02460 Genome accession   NZ_CP141997
Coordinates   483235..483669 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain PM0031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 478235..488669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS02430 (VDS58_02430) ydaD 478882..479742 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  VDS58_RS02435 (VDS58_02435) lyxE 479758..480261 (+) 504 WP_088272170.1 D-lyxose ketol-isomerase -
  VDS58_RS02440 (VDS58_02440) ydaF 480350..480901 (+) 552 WP_260665500.1 GNAT family N-acetyltransferase -
  VDS58_RS02445 (VDS58_02445) ydaG 480979..481401 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  VDS58_RS02450 (VDS58_02450) amj 481906..482715 (+) 810 WP_014478868.1 lipid II flippase Amj -
  VDS58_RS02455 (VDS58_02455) ydzA 482760..483050 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  VDS58_RS02460 (VDS58_02460) lrpC 483235..483669 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  VDS58_RS02465 (VDS58_02465) topB 483734..485917 (+) 2184 WP_088272171.1 DNA topoisomerase III -
  VDS58_RS02470 (VDS58_02470) mutT 486030..486482 (+) 453 WP_129133879.1 8-oxo-dGTP diphosphatase MutT -
  VDS58_RS02475 (VDS58_02475) poxB 486546..488270 (+) 1725 WP_014478872.1 pyruvate oxidase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=838875 VDS58_RS02460 WP_003246585.1 483235..483669(+) (lrpC) [Bacillus subtilis strain PM0031]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=838875 VDS58_RS02460 WP_003246585.1 483235..483669(+) (lrpC) [Bacillus subtilis strain PM0031]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1