Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   VDS58_RS02975 Genome accession   NZ_CP141997
Coordinates   570651..571289 (+) Length   212 a.a.
NCBI ID   WP_088272177.1    Uniprot ID   -
Organism   Bacillus subtilis strain PM0031     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 565651..576289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS58_RS02950 (VDS58_02950) ydfD 565960..567408 (+) 1449 WP_260665497.1 PLP-dependent aminotransferase family protein -
  VDS58_RS02955 (VDS58_02955) - 567476..568918 (-) 1443 WP_014478967.1 pyridoxal phosphate-dependent decarboxylase family protein -
  VDS58_RS02960 (VDS58_02960) ydfE 569039..569662 (-) 624 WP_014478968.1 flavin reductase family protein -
  VDS58_RS02965 (VDS58_02965) ydfF 569752..570432 (+) 681 WP_014478969.1 ArsR/SmtB family transcription factor -
  VDS58_RS02970 (VDS58_02970) - 570491..570658 (+) 168 Protein_534 sensor histidine kinase -
  VDS58_RS02975 (VDS58_02975) vraR 570651..571289 (+) 639 WP_088272177.1 two-component system response regulator YdfI Regulator
  VDS58_RS02980 (VDS58_02980) pleJ 571405..573579 (+) 2175 WP_033881069.1 MMPL family transporter -
  VDS58_RS02985 (VDS58_02985) cesA 573990..574892 (-) 903 WP_014478976.1 carboxylesterase -
  VDS58_RS02990 (VDS58_02990) ydfK 575095..575784 (-) 690 WP_019712443.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23831.77 Da        Isoelectric Point: 5.4183

>NTDB_id=838876 VDS58_RS02975 WP_088272177.1 570651..571289(+) (vraR) [Bacillus subtilis strain PM0031]
MNKVLIVDDHLVVREGLKLLIETNDQYSIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLEIQFERMKKQRNETQLTEKEVIVLKAIA
KGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 639 bp        

>NTDB_id=838876 VDS58_RS02975 WP_088272177.1 570651..571289(+) (vraR) [Bacillus subtilis strain PM0031]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CTCCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTAGAAA
TCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATTGCT
AAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCATTTA
CAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.667

99.057

0.363