Detailed information
Bioinformatically predicted
Overview
| Name | rapC | Type | Regulator |
| Locus tag | VDS58_RS04235 | Genome accession | NZ_CP141997 |
| Coordinates | 803283..804413 (+) | Length | 376 a.a. |
| NCBI ID | WP_088272212.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain PM0031 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 798283..809413
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VDS58_RS04215 (VDS58_04215) | yeeF | 798372..800381 (-) | 2010 | WP_121548732.1 | LXG family T7SS effector deoxyribonuclease toxin YeeF | - |
| VDS58_RS04220 (VDS58_04220) | - | 800547..800885 (+) | 339 | WP_024571793.1 | hypothetical protein | - |
| VDS58_RS04225 (VDS58_04225) | - | 800898..801818 (+) | 921 | WP_024571794.1 | DUF5655 domain-containing protein | - |
| VDS58_RS04230 (VDS58_04230) | - | 801975..803135 (+) | 1161 | WP_069837347.1 | lysozyme inhibitor LprI family protein | - |
| VDS58_RS04235 (VDS58_04235) | rapC | 803283..804413 (+) | 1131 | WP_088272212.1 | response regulator aspartate phosphatase RapH | Regulator |
| VDS58_RS04240 (VDS58_04240) | phrH | 804403..804576 (+) | 174 | WP_003242557.1 | phosphatase RapH inhibitor PhrH | - |
| VDS58_RS04245 (VDS58_04245) | yeeI | 804736..805455 (+) | 720 | WP_003233863.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| VDS58_RS04250 (VDS58_04250) | - | 805589..806080 (+) | 492 | WP_260665449.1 | spore coat protein | - |
| VDS58_RS04255 (VDS58_04255) | yezE | 806195..806779 (+) | 585 | WP_260665448.1 | TetR/AcrR family transcriptional regulator | - |
| VDS58_RS04260 (VDS58_04260) | cotJA | 806956..807204 (+) | 249 | WP_003219489.1 | spore coat-associated protein CotJA | - |
| VDS58_RS04265 (VDS58_04265) | cotJB | 807188..807451 (+) | 264 | WP_003219491.1 | spore coat protein CotJB | - |
| VDS58_RS04270 (VDS58_04270) | cotJC | 807466..808035 (+) | 570 | WP_003233850.1 | spore coat protein CotJC | - |
| VDS58_RS04275 (VDS58_04275) | yesJ | 808160..808702 (+) | 543 | WP_260665447.1 | GNAT family N-acetyltransferase | - |
| VDS58_RS04280 (VDS58_04280) | yesK | 808725..809027 (+) | 303 | WP_042978019.1 | YesK-like family protein | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 44044.42 Da Isoelectric Point: 5.9937
>NTDB_id=838878 VDS58_RS04235 WP_088272212.1 803283..804413(+) (rapC) [Bacillus subtilis strain PM0031]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQKMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQKMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY
Nucleotide
Download Length: 1131 bp
>NTDB_id=838878 VDS58_RS04235 WP_088272212.1 803283..804413(+) (rapC) [Bacillus subtilis strain PM0031]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCAGAGATTCTGAAAGCAGAGGTGGAGCAGGACATTCAGAAGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAGCCTTACGGAAATCGTCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCAGAGATTCTGAAAGCAGAGGTGGAGCAGGACATTCAGAAGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAGCCTTACGGAAATCGTCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
40.691 |
100 |
0.407 |
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
40.053 |
100 |
0.402 |