Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QPK28_RS19630 Genome accession   NZ_CP126576
Coordinates   3705994..3706683 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus licheniformis strain CQMB003     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3700994..3711683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS19595 - 3701166..3701642 (-) 477 WP_003185711.1 flagellar protein FlgN -
  QPK28_RS19600 flgM 3701661..3701927 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  QPK28_RS19605 - 3702007..3702426 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  QPK28_RS19610 comFC 3702485..3703219 (-) 735 WP_059260889.1 amidophosphoribosyltransferase Machinery gene
  QPK28_RS19615 - 3703176..3703460 (-) 285 WP_003185718.1 competence protein ComFB -
  QPK28_RS19620 comFA 3703515..3704909 (-) 1395 WP_059260886.1 DEAD/DEAH box helicase Machinery gene
  QPK28_RS19625 - 3705032..3705874 (-) 843 WP_003185726.1 DegV family protein -
  QPK28_RS19630 degU 3705994..3706683 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  QPK28_RS19635 degS 3706765..3707922 (-) 1158 WP_003185733.1 histidine kinase Regulator
  QPK28_RS19640 - 3708136..3708774 (+) 639 WP_003185736.1 YigZ family protein -
  QPK28_RS19645 - 3708789..3709865 (+) 1077 WP_003185737.1 LCP family protein -
  QPK28_RS19650 - 3709950..3710324 (-) 375 WP_003185738.1 hypothetical protein -
  QPK28_RS19655 - 3710444..3711508 (-) 1065 WP_003185739.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=838824 QPK28_RS19630 WP_003185730.1 3705994..3706683(-) (degU) [Bacillus licheniformis strain CQMB003]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=838824 QPK28_RS19630 WP_003185730.1 3705994..3706683(-) (degU) [Bacillus licheniformis strain CQMB003]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTTGTTA
TCATGGATATTAATATGCCGAATGTGAACGGAGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCCATCCATGATGACGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGGGGCTATCTGCTGAAAGA
AATGGATGCCGATACGCTGATCGAAGCCGTGAAAGTAGTAGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACACACA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAGGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTCACAAGAAGGGAATGCGAGGTACTGCAGATGCTGGCGGATGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTTGTTGTAGCCATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987