Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QPK28_RS19620 Genome accession   NZ_CP126576
Coordinates   3703515..3704909 (-) Length   464 a.a.
NCBI ID   WP_059260886.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CQMB003     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3698515..3709909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS19585 flgL 3698705..3699616 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  QPK28_RS19590 flgK 3699627..3701150 (-) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  QPK28_RS19595 - 3701166..3701642 (-) 477 WP_003185711.1 flagellar protein FlgN -
  QPK28_RS19600 flgM 3701661..3701927 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  QPK28_RS19605 - 3702007..3702426 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  QPK28_RS19610 comFC 3702485..3703219 (-) 735 WP_059260889.1 amidophosphoribosyltransferase Machinery gene
  QPK28_RS19615 - 3703176..3703460 (-) 285 WP_003185718.1 competence protein ComFB -
  QPK28_RS19620 comFA 3703515..3704909 (-) 1395 WP_059260886.1 DEAD/DEAH box helicase Machinery gene
  QPK28_RS19625 - 3705032..3705874 (-) 843 WP_003185726.1 DegV family protein -
  QPK28_RS19630 degU 3705994..3706683 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  QPK28_RS19635 degS 3706765..3707922 (-) 1158 WP_003185733.1 histidine kinase Regulator
  QPK28_RS19640 - 3708136..3708774 (+) 639 WP_003185736.1 YigZ family protein -
  QPK28_RS19645 - 3708789..3709865 (+) 1077 WP_003185737.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52906.53 Da        Isoelectric Point: 9.8972

>NTDB_id=838823 QPK28_RS19620 WP_059260886.1 3703515..3704909(-) (comFA) [Bacillus licheniformis strain CQMB003]
MIHIEQPAFYTRELRSCLEQRHLLKSELPFRESVVDWHIQEGLIKTEEGIKKTKKGFICLRCGQHERSFFARYPCYRCSK
CCVYCRSCVMMGRVSDCTPLLTWHMHVSHKWAPVHTEWKGALSAGQEKAAKSIINAIRRKEELLVWAVCGSGKTELLFQG
IEFALNNGLTVCIATPRTDVVLELAPRFRQAFPGVEIAALYGGSSDVGNLSPLIISTTHQLLRYKEAFDVIIIDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSADMKKRAESGKLDTVRIPARFHRSPLPEPTLIWCGNWKKSLKRRKVPFRLK
KWLFKHQELQQPVFLFVPSVPVLKSVVSVLKKETFRAEGVYADDPDRNEKVNRFRESKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFTESALVQMAGRAGRHPEHTDGDVCFFHYGRTKSMNEARRHIQNMNKMSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=838823 QPK28_RS19620 WP_059260886.1 3703515..3704909(-) (comFA) [Bacillus licheniformis strain CQMB003]
GTGATTCACATCGAACAACCGGCATTCTATACCCGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCGTGAATCCGTCGTTGATTGGCATATCCAAGAAGGCTTGATAAAAACGGAGGAAGGTATTAAAAAAACGA
AGAAAGGCTTTATTTGTTTGAGGTGCGGCCAGCACGAACGCTCATTTTTCGCCCGGTATCCTTGCTATCGGTGCAGTAAA
TGCTGCGTGTACTGCCGATCCTGCGTCATGATGGGCAGGGTGAGCGATTGTACGCCTCTGTTGACTTGGCACATGCATGT
CAGCCATAAATGGGCGCCTGTTCATACGGAGTGGAAAGGCGCGCTTTCAGCAGGTCAGGAGAAAGCGGCCAAATCCATTA
TCAATGCTATACGAAGAAAAGAAGAACTGTTGGTCTGGGCGGTTTGCGGGTCGGGGAAAACAGAACTTCTCTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGCTTGACAGTATGTATCGCTACTCCGAGAACCGATGTCGTACTCGAGCTTGCTCCGCG
GTTTCGCCAAGCCTTTCCAGGGGTGGAAATTGCCGCTTTGTACGGAGGAAGCTCAGACGTTGGGAATCTCTCGCCGCTTA
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCATAGATGAGGTGGATGCTTTTCCG
TATTCTATTGATAACACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCTCACATCTATTTAACTGCCAC
GCCTTCAGCAGATATGAAAAAAAGGGCTGAGAGCGGAAAGCTGGACACCGTCCGTATTCCCGCGAGATTCCACCGCAGCC
CCTTGCCTGAGCCTACATTGATTTGGTGCGGAAATTGGAAAAAGAGTTTGAAACGAAGAAAAGTTCCTTTTCGCCTCAAA
AAATGGCTTTTTAAGCACCAAGAACTGCAGCAACCGGTTTTTTTATTCGTTCCCTCTGTCCCTGTTCTTAAATCTGTGGT
CAGTGTGCTGAAAAAGGAAACATTTCGCGCTGAAGGAGTTTATGCCGATGACCCTGACAGAAATGAAAAAGTGAACCGGT
TTAGGGAAAGTAAGCTTGAGGTGCTCGTGACAACAACGATTTTGGAAAGAGGAGTGACCGTCAAAAAAGCGCAGGTTGGA
GTATTGGGGGCAGAGTCGGCGGTTTTTACCGAAAGCGCCCTCGTCCAAATGGCGGGAAGAGCCGGCAGGCATCCCGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATTACGGCAGGACAAAGTCGATGAATGAGGCACGACGTCATATTCAAAACATGA
ATAAAATGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(122-269)

Helicase conserved C-terminal domain (Helicase_C)

(323-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.332

98.707

0.556