Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QPK28_RS19610 Genome accession   NZ_CP126576
Coordinates   3702485..3703219 (-) Length   244 a.a.
NCBI ID   WP_059260889.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CQMB003     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3697485..3708219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS19575 fliW 3697635..3698066 (-) 432 WP_025807162.1 flagellar assembly protein FliW -
  QPK28_RS19580 - 3698088..3698654 (-) 567 WP_003185702.1 DUF6470 family protein -
  QPK28_RS19585 flgL 3698705..3699616 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  QPK28_RS19590 flgK 3699627..3701150 (-) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  QPK28_RS19595 - 3701166..3701642 (-) 477 WP_003185711.1 flagellar protein FlgN -
  QPK28_RS19600 flgM 3701661..3701927 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  QPK28_RS19605 - 3702007..3702426 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  QPK28_RS19610 comFC 3702485..3703219 (-) 735 WP_059260889.1 amidophosphoribosyltransferase Machinery gene
  QPK28_RS19615 - 3703176..3703460 (-) 285 WP_003185718.1 competence protein ComFB -
  QPK28_RS19620 comFA 3703515..3704909 (-) 1395 WP_059260886.1 DEAD/DEAH box helicase Machinery gene
  QPK28_RS19625 - 3705032..3705874 (-) 843 WP_003185726.1 DegV family protein -
  QPK28_RS19630 degU 3705994..3706683 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  QPK28_RS19635 degS 3706765..3707922 (-) 1158 WP_003185733.1 histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27854.24 Da        Isoelectric Point: 9.6519

>NTDB_id=838822 QPK28_RS19610 WP_059260889.1 3702485..3703219(-) (comFC) [Bacillus licheniformis strain CQMB003]
MKTRFAQAIEEGGNKLNCLICAAPLLHSLSWHSFFFLRSEEKICRECKENFIEIKGTVCPKCGRPQGSEELCGDCAKWEA
NPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFISAFQQYFRRSPSVLVPIPLSEERKAERGFNQAERL
ASLLQRPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDVILIDDLYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=838822 QPK28_RS19610 WP_059260889.1 3702485..3703219(-) (comFC) [Bacillus licheniformis strain CQMB003]
ATGAAAACCCGCTTTGCGCAAGCAATCGAAGAGGGAGGGAATAAACTGAATTGTTTAATTTGTGCAGCGCCTCTTTTACA
TTCTCTCTCATGGCATTCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGAATGTAAAGAGAACTTTATCGAGA
TCAAAGGAACCGTATGCCCTAAGTGCGGACGGCCACAGGGGAGCGAAGAGCTGTGCGGTGACTGCGCAAAATGGGAGGCC
AATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTTTATCTCTACAATACTTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCCCCTTCATTTATCAGCGCTTTTCAACAATACTTCCGCC
GCAGCCCGTCTGTTTTAGTTCCGATACCTCTCAGTGAAGAACGTAAAGCGGAGAGGGGATTTAATCAGGCGGAGCGTCTT
GCTTCCTTATTACAAAGACCCGTTATTCATCCCTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGGAAAGA
GCGAATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGGTCAGTAAAGAATCTGGATGTCATATTGATTGACGACTTGT
ATACGACAGGAGCGACCCTTCATCATGCCGCTGATTGCCTGATGACATCCGGAGAAGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-242)

Double zinc ribbon domain (DZR_2)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.743

97.131

0.512