Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   VN992_RS02295 Genome accession   NZ_CP141949
Coordinates   502160..503500 (+) Length   446 a.a.
NCBI ID   WP_005620045.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain AH2022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 497160..508500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VN992_RS02270 (VN992_02270) msrB 497623..498018 (-) 396 WP_005620040.1 peptide-methionine (R)-S-oxide reductase MsrB -
  VN992_RS02275 (VN992_02275) gap 498241..499245 (+) 1005 WP_005620042.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  VN992_RS02280 (VN992_02280) - 499441..500493 (+) 1053 WP_005607179.1 rod shape-determining protein -
  VN992_RS02285 (VN992_02285) mreC 500610..501659 (+) 1050 WP_005600525.1 rod shape-determining protein MreC -
  VN992_RS02290 (VN992_02290) mreD 501659..502147 (+) 489 WP_005596506.1 rod shape-determining protein MreD -
  VN992_RS02295 (VN992_02295) rarA 502160..503500 (+) 1341 WP_005620045.1 replication-associated recombination protein A Machinery gene
  VN992_RS02300 (VN992_02300) znuB 503581..504366 (+) 786 WP_370427242.1 zinc ABC transporter permease subunit ZnuB -
  VN992_RS02305 (VN992_02305) - 504546..505343 (+) 798 WP_005596509.1 class II glutamine amidotransferase -
  VN992_RS02310 (VN992_02310) - 505423..506499 (-) 1077 WP_370427243.1 homoserine O-acetyltransferase -
  VN992_RS02315 (VN992_02315) - 506791..507480 (+) 690 WP_039709007.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50237.92 Da        Isoelectric Point: 6.8308

>NTDB_id=838757 VN992_RS02295 WP_005620045.1 502160..503500(+) (rarA) [Actinobacillus pleuropneumoniae strain AH2022]
MSSLSFDFSEDFRPLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVERL
SAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYI
LKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKHLNKALLAEVLG
ERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVAINAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRLAKEGKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAG
ENYFPPELKDTVFYHPTERGMEKQIKEKLQWLKAQDQASLQQRYKR

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=838757 VN992_RS02295 WP_005620045.1 502160..503500(+) (rarA) [Actinobacillus pleuropneumoniae strain AH2022]
ATGAGTAGTTTGTCCTTTGATTTTTCAGAAGATTTTAGACCGCTGCCCGCCAGAATGCGTCCACGCACACTGGCGGAGTA
TATCGGGCAAGCTCATCTTATCGGAGAAGGTAAACCGCTACGCCGCGCGATAGAAGCGGGACATTCTCATTCCATGATCT
TCTGGGGGCCTCCCGGCACCGGTAAAACGACGTTAGCGGAAATTATCGCGCATCATTTTGATGCGGAAGTGGAACGCCTT
TCTGCGGTTACCAGCGGTGTGAAGGAAATCAGAGAAGCGATAGAGCGGGCTAAGCTCAATCGACAAACCGGCAGACGAAC
ATTACTTTTTGTCGATGAAGTACATCGCTTTAATAAAAGCCAACAAGACGCTTTTCTGCCGCATATTGAAGACGGCACCA
TTATTTTTATCGGTGCGACAACCGAGAATCCATCCTTTGAATTAAATAACGCCTTACTTTCCCGTGCGAAAATCTATATT
TTAAAACCGTTGCAAGCGGTTGAAATTGCACAAGTTTTAACTAATGCGCTTTACGATAAAGAACGAGGCTTAGGTAATGA
AAGCTATTACATCGAAGATAATGTGATTGAATTACTCGCCGATTACGTAAATGGGGATGCGAGATTCGCTTTAAATTGCT
TAGAACTGATGTCGGATATGGCAGAGATTTCCCCTCAAGGAAAACACCTGAATAAAGCATTGTTAGCCGAAGTATTGGGA
GAGCGACAAGCTCGATTTGATAAAGGCGGCGATCGTTACTATGATTTAATCTCGGCATTGCATAAGTCGGTACGGGGCTC
ATCACCGGACGGCGCGTTGTATTGGTATGCGAGAATTTTAACCGCAGGCGGCGATCCTTTGTATGTTGCGCGCCGATTAT
TGGCAATCGCTTCGGAAGATATTGGCAATGCTGACCCTAGAGCGATGCAAGTTGCGATTAACGCTTGGGATTGCTATACC
CGAGTCGGGGCTTACGAAGGTGAAAGAGCGATTGCGCAAGCGGTGATTTATTTGGCGGTTGCGCCTAAAAGTAATGCGGT
TTATAACGCTTTCAATGAAGCGAAACGTCTTGCGAAAGAGGGCAAAGATTACGATGTACCGGAACATCTGCGCAATGCAC
CGACTAAGTTGATGAAATCGTTAGGTTATGGTGAAGAGTATCGTTACGCACATCATGAACCGAACGCTTATGCCGCCGGC
GAAAACTACTTCCCGCCGGAATTAAAAGATACGGTATTTTATCACCCGACGGAACGGGGAATGGAAAAGCAAATTAAGGA
AAAATTGCAGTGGCTTAAAGCACAGGATCAAGCCAGCTTACAACAACGTTACAAGCGGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(19-143)

MgsA AAA+ ATPase C terminal (MgsA_C)

(266-432)

AAA C-terminal domain (AAA_assoc_2)

(186-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41.135

94.843

0.39