Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LLUL007_RS11660 Genome accession   NZ_CP126569
Coordinates   2242315..2242815 (-) Length   166 a.a.
NCBI ID   WP_396425830.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UL007     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2242315..2262600 2242315..2242815 within 0


Gene organization within MGE regions


Location: 2242315..2262600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUL007_RS11660 (LLUL007_11715) ssb 2242315..2242815 (-) 501 WP_396425830.1 single-stranded DNA-binding protein Machinery gene
  LLUL007_RS11665 (LLUL007_11720) rpsF 2242845..2243138 (-) 294 WP_011677242.1 30S ribosomal protein S6 -
  LLUL007_RS11670 (LLUL007_11725) - 2243332..2244186 (-) 855 WP_011677243.1 undecaprenyl-diphosphate phosphatase -
  LLUL007_RS11675 (LLUL007_11730) - 2244708..2246174 (+) 1467 WP_396425831.1 amino acid permease -
  LLUL007_RS11680 (LLUL007_11735) dnaX 2246208..2247869 (-) 1662 WP_396425832.1 DNA polymerase III subunit gamma/tau -
  LLUL007_RS11685 (LLUL007_11740) - 2247915..2248556 (-) 642 WP_011677246.1 phosphotransferase -
  LLUL007_RS11690 (LLUL007_11745) - 2248588..2249076 (-) 489 WP_396425833.1 GAF domain-containing protein -
  LLUL007_RS11695 (LLUL007_11750) - 2249160..2249432 (+) 273 WP_396425834.1 chorismate mutase -
  LLUL007_RS11700 (LLUL007_11755) - 2249466..2249915 (-) 450 WP_396425835.1 hypothetical protein -
  LLUL007_RS11705 (LLUL007_11760) - 2250205..2251389 (-) 1185 WP_396419919.1 tyrosine-type recombinase/integrase -
  LLUL007_RS11710 (LLUL007_11765) - 2252336..2252833 (-) 498 WP_396425836.1 hypothetical protein -
  LLUL007_RS11715 (LLUL007_11770) - 2253098..2253292 (-) 195 WP_021212116.1 hypothetical protein -
  LLUL007_RS11720 (LLUL007_11775) - 2253407..2254003 (-) 597 WP_021212117.1 helix-turn-helix transcriptional regulator -
  LLUL007_RS11725 (LLUL007_11780) - 2254512..2255177 (+) 666 WP_396425837.1 Bro-N domain-containing protein -
  LLUL007_RS11730 (LLUL007_11785) - 2255273..2255467 (+) 195 WP_011677056.1 DUF1655 domain-containing protein -
  LLUL007_RS11735 (LLUL007_11790) - 2255471..2255992 (+) 522 WP_396425838.1 hypothetical protein -
  LLUL007_RS11740 (LLUL007_11795) - 2255989..2256123 (+) 135 WP_396425840.1 hypothetical protein -
  LLUL007_RS11745 (LLUL007_11800) - 2256205..2256486 (+) 282 WP_023164724.1 hypothetical protein -
  LLUL007_RS11750 (LLUL007_11805) - 2256529..2256768 (+) 240 WP_039114371.1 hypothetical protein -
  LLUL007_RS11755 (LLUL007_11810) - 2256967..2257161 (+) 195 WP_021216191.1 hypothetical protein -
  LLUL007_RS11760 (LLUL007_11815) - 2257148..2257474 (+) 327 WP_021216192.1 hypothetical protein -
  LLUL007_RS11765 (LLUL007_11820) - 2257487..2258281 (+) 795 WP_396425841.1 bifunctional DNA primase/polymerase -
  LLUL007_RS11770 (LLUL007_11825) - 2258292..2259920 (+) 1629 WP_396425842.1 phage/plasmid primase, P4 family -
  LLUL007_RS11775 (LLUL007_11830) - 2260141..2260347 (+) 207 WP_010906212.1 hypothetical protein -
  LLUL007_RS11780 (LLUL007_11835) - 2260505..2261077 (+) 573 WP_396425844.1 hypothetical protein -
  LLUL007_RS11785 (LLUL007_11840) - 2261096..2261458 (+) 363 WP_396425845.1 hypothetical protein -
  LLUL007_RS11790 (LLUL007_11845) - 2262400..2262600 (+) 201 WP_011836112.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18249.05 Da        Isoelectric Point: 5.2166

>NTDB_id=838757 LLUL007_RS11660 WP_396425830.1 2242315..2242815(-) (ssb) [Lactococcus cremoris strain UL007]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASSGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=838757 LLUL007_RS11660 WP_396425830.1 2242315..2242815(-) (ssb) [Lactococcus cremoris strain UL007]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTTCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.395

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.367