Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QMK35_RS12830 Genome accession   NZ_CP126540
Coordinates   2645217..2645729 (-) Length   170 a.a.
NCBI ID   WP_107385199.1    Uniprot ID   -
Organism   Staphylococcus cohnii strain SDAQ-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2640217..2650729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK35_RS12800 (QMK35_12800) - 2640776..2641390 (-) 615 WP_119535917.1 stage II sporulation protein M -
  QMK35_RS12805 (QMK35_12805) - 2641955..2642152 (-) 198 WP_107505295.1 hypothetical protein -
  QMK35_RS12810 (QMK35_12810) - 2642472..2643017 (-) 546 WP_210140246.1 hypothetical protein -
  QMK35_RS12815 (QMK35_12815) - 2644232..2644438 (+) 207 WP_107504662.1 hypothetical protein -
  QMK35_RS12820 (QMK35_12820) - 2644462..2644599 (+) 138 WP_192959263.1 hypothetical protein -
  QMK35_RS12825 (QMK35_12825) rpsR 2644925..2645167 (-) 243 WP_002484306.1 30S ribosomal protein S18 -
  QMK35_RS12830 (QMK35_12830) ssbA 2645217..2645729 (-) 513 WP_107385199.1 single-stranded DNA-binding protein Machinery gene
  QMK35_RS12835 (QMK35_12835) rpsF 2645748..2646053 (-) 306 WP_019469843.1 30S ribosomal protein S6 -
  QMK35_RS12840 (QMK35_12840) - 2646444..2647241 (+) 798 WP_210140247.1 GH25 family lysozyme -
  QMK35_RS12845 (QMK35_12845) ychF 2647533..2648630 (-) 1098 WP_107504664.1 redox-regulated ATPase YchF -
  QMK35_RS12850 (QMK35_12850) - 2648631..2648846 (-) 216 WP_046836920.1 DUF951 domain-containing protein -
  QMK35_RS12855 (QMK35_12855) - 2648867..2649751 (-) 885 WP_107385873.1 mechanosensitive ion channel family protein -
  QMK35_RS12860 (QMK35_12860) - 2650153..2650521 (-) 369 WP_107384209.1 DUF2294 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18989.53 Da        Isoelectric Point: 4.9163

>NTDB_id=838692 QMK35_RS12830 WP_107385199.1 2645217..2645729(-) (ssbA) [Staphylococcus cohnii strain SDAQ-1]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHAQEGNNNFQNFGGQQSGQNTSSYQNNNNNNNSSNNNQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=838692 QMK35_RS12830 WP_107385199.1 2645217..2645729(-) (ssbA) [Staphylococcus cohnii strain SDAQ-1]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCTGATTTCATTAACTGCGTTGTTT
TTAGAAAACAAGCAGAAAATGTAAATAACTACTTATTCAAAGGTAGTCTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGTCGTCGTATATTTGTAACTGAAGTTGTCTGCGATAGCGTTCAATTCCTTGAACCTAAAAA
CCAAAATCAGCGTCATGCTCAAGAAGGAAATAATAATTTCCAGAATTTTGGTGGACAACAATCCGGACAAAATACGTCAT
CTTATCAAAACAATAACAATAATAATAATTCATCAAACAATAATCAATCAGATAACCCATTTGCAAATGCAAACGGCCCT
ATTGATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.006

100

0.641
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.594
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

64.706

0.382
  ssb Glaesserella parasuis strain SC1401

32.979

100

0.365