Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VJ737_RS18025 Genome accession   NZ_CP141909
Coordinates   3997905..3999314 (+) Length   469 a.a.
NCBI ID   WP_184594843.1    Uniprot ID   A0A7W4ZTS8
Organism   Streptomyces sp. CGMCC 4.1772     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3992905..4004314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ737_RS18005 (VJ737_18005) - 3993055..3993879 (-) 825 WP_184594851.1 sugar phosphate isomerase/epimerase -
  VJ737_RS18010 (VJ737_18010) - 3993977..3994909 (-) 933 WP_184594849.1 Ppx/GppA phosphatase family protein -
  VJ737_RS18015 (VJ737_18015) - 3994981..3995781 (+) 801 WP_184594847.1 hypothetical protein -
  VJ737_RS18020 (VJ737_18020) - 3996003..3997709 (-) 1707 WP_184594845.1 hypothetical protein -
  VJ737_RS18025 (VJ737_18025) radA 3997905..3999314 (+) 1410 WP_184594843.1 DNA repair protein RadA Machinery gene
  VJ737_RS18030 (VJ737_18030) disA 3999395..4000519 (+) 1125 WP_184594841.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  VJ737_RS18035 (VJ737_18035) - 4000613..4001512 (-) 900 WP_184594839.1 hypothetical protein -
  VJ737_RS18040 (VJ737_18040) - 4001688..4002329 (+) 642 WP_184594837.1 phosphatase PAP2 family protein -
  VJ737_RS18045 (VJ737_18045) - 4002342..4002998 (-) 657 WP_184594835.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49793.99 Da        Isoelectric Point: 8.2598

>NTDB_id=838692 VJ737_RS18025 WP_184594843.1 3997905..3999314(+) (radA) [Streptomyces sp. CGMCC 4.1772]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTTPGRVTTSALPIGQVDVRRATARTTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKIPAGMKVLEVSDIGDALQVLPRSRRREAPRDEEGRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=838692 VJ737_RS18025 WP_184594843.1 3997905..3999314(+) (radA) [Streptomyces sp. CGMCC 4.1772]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGCCCGTCCTACCGCTGCACGGAGTGCGGGTGGCAGACGGCGAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCACGCCCGCGGTCCGTACGACGACGCCGGGCA
GGGTCACCACCTCCGCCCTGCCCATCGGCCAGGTCGACGTCCGCCGGGCGACGGCCCGCACCACCGGCGTGCCCGAGCTG
GACCGCGTGCTCGGCGGCGGCCTGGTCCCCGGCGCGGTGGTGCTGGTCGCGGGTGAGCCGGGCGTCGGCAAGTCGACGCT
CCTGCTCGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACGCTGTACGTCACGGGCGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCCATCGACGACCATCTGTACCTGGCCGCCGAGACGGATCTGGCGGCGGTGCTG
GGCCACTTGGACGCGGTGAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
GCCCGGCGGTATGGCCCAGGTGCGGGAGGTCGCCGGAGCCCTGATCCGGGCGTCGAAGGAACGCGGCATGTCCACGCTGC
TCGTCGGCCATGTCACCAAGGACGGCGCCATCGCGGGCCCGCGCCTGCTGGAACACCTCGTGGACGTGGTGCTGCACTTC
GAGGGCGACCGGCACGCCCGCCTCCGCCTCGTACGAGGCGTCAAGAACCGCTACGGCACCACCGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGACTTTTCCTGACGCGTCGGGCCGAACCGGTCCCGG
GCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCCCCCCGCCGCACCACCTCGGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCGGTGCTGGAACAGCGCGGCCG
GATCAGCGCCTTGGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGTGTGAAGCTCTCGGAGCCCGCGGCGGATCTGG
CCGTGGCCCTCGCCCTGGCCAGCGCGGCGAGTGACACACCTCTCCCCAAGAACCTGGTCGCGATCGGGGAAGTCGGCCTC
GCGGGCGAGGTGAGACGGGTCACGGGCGTGCAGCGCAGGCTGGCGGAAGCCCACCGGCTGGGCTTCACACACGCCCTGGT
ACCGGGCGACCCGGGCAAGATCCCCGCGGGTATGAAGGTTCTGGAAGTCTCGGACATAGGGGACGCGCTGCAGGTCCTTC
CGCGCTCCCGTCGCAGAGAGGCCCCACGGGACGAGGAGGGTCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(77-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4ZTS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

42.92

96.375

0.414
  radA Streptococcus mitis NCTC 12261

42.92

96.375

0.414
  radA Streptococcus pneumoniae R6

42.984

95.736

0.412
  radA Streptococcus pneumoniae Rx1

42.984

95.736

0.412
  radA Streptococcus pneumoniae TIGR4

42.984

95.736

0.412
  radA Streptococcus pneumoniae D39

42.984

95.736

0.412
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.257

96.375

0.407