Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QOV41_RS11720 Genome accession   NZ_CP126539
Coordinates   2371844..2372365 (-) Length   173 a.a.
NCBI ID   WP_284576774.1    Uniprot ID   -
Organism   Devosia rhizosphaerae strain RR2S18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2366844..2377365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOV41_RS11700 (QOV41_11700) - 2367139..2367543 (-) 405 WP_284576766.1 winged helix-turn-helix transcriptional regulator -
  QOV41_RS11705 (QOV41_11705) - 2367683..2368561 (+) 879 WP_284576768.1 NAD(P)H-binding protein -
  QOV41_RS11710 (QOV41_11710) - 2368674..2371022 (+) 2349 WP_284576771.1 efflux RND transporter permease subunit -
  QOV41_RS11715 (QOV41_11715) - 2371209..2371736 (+) 528 WP_284576773.1 hypothetical protein -
  QOV41_RS11720 (QOV41_11720) ssb 2371844..2372365 (-) 522 WP_284576774.1 single-stranded DNA-binding protein Machinery gene
  QOV41_RS11725 (QOV41_11725) - 2372704..2372856 (+) 153 WP_284576776.1 hypothetical protein -
  QOV41_RS11730 (QOV41_11730) uvrA 2373231..2376122 (+) 2892 WP_284576778.1 excinuclease ABC subunit UvrA -
  QOV41_RS11735 (QOV41_11735) - 2376346..2376498 (+) 153 WP_284576779.1 hypothetical protein -
  QOV41_RS11740 (QOV41_11740) - 2376697..2376846 (+) 150 WP_284576781.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18550.45 Da        Isoelectric Point: 5.9744

>NTDB_id=838655 QOV41_RS11720 WP_284576774.1 2371844..2372365(-) (ssb) [Devosia rhizosphaerae strain RR2S18]
MAGSVNKVILVGNLGADPEVRNLPSGGKVVNLSVATSERWKDRNSGEQREKTEWHRVVIFSEGLARVAEQYLKKGSKVYL
EGQLQTRKWQDQSGQDKYSTEIVLQNFNSSMVLLDGREGEGGFRGGGGAGEGGGGYGNDTGFRGVRDQGGGGRRPSTNAP
AFEPGGMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=838655 QOV41_RS11720 WP_284576774.1 2371844..2372365(-) (ssb) [Devosia rhizosphaerae strain RR2S18]
ATGGCGGGCAGCGTGAACAAGGTAATTCTGGTGGGCAATCTCGGTGCCGACCCCGAGGTGCGGAACCTGCCGAGCGGCGG
CAAGGTGGTGAACCTGTCGGTCGCCACATCCGAGCGCTGGAAGGACCGCAATTCGGGCGAACAGCGCGAAAAGACCGAGT
GGCATCGCGTGGTGATCTTCTCGGAAGGTCTGGCCCGCGTGGCCGAGCAGTACCTTAAGAAGGGTTCCAAGGTTTACCTC
GAAGGCCAGTTGCAGACCCGCAAGTGGCAGGATCAGTCGGGTCAGGACAAGTACTCGACCGAGATCGTGCTGCAGAACTT
CAACTCCTCCATGGTGCTGCTCGACGGCCGTGAGGGTGAAGGCGGCTTCCGCGGCGGTGGTGGCGCTGGCGAGGGCGGCG
GCGGCTATGGCAACGACACCGGTTTCCGCGGCGTGCGCGATCAGGGTGGCGGTGGGCGCCGGCCATCGACCAATGCGCCG
GCCTTCGAGCCGGGCGGCATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.741

100

0.555
  ssb Vibrio cholerae strain A1552

53.409

100

0.543
  ssb Neisseria meningitidis MC58

41.989

100

0.439
  ssb Neisseria gonorrhoeae MS11

41.989

100

0.439