Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QPL84_RS26940 Genome accession   NZ_CP126525
Coordinates   5230091..5230612 (-) Length   173 a.a.
NCBI ID   WP_000981965.1    Uniprot ID   A0A8I1GPV4
Organism   Bacillus toyonensis strain Puebla_S2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5225091..5235612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL84_RS26920 (QPL84_26920) rplI 5226302..5226748 (-) 447 WP_000864222.1 50S ribosomal protein L9 -
  QPL84_RS26925 (QPL84_26925) - 5226745..5228718 (-) 1974 WP_001113905.1 DHH family phosphoesterase -
  QPL84_RS26930 (QPL84_26930) - 5228797..5229732 (-) 936 WP_000814850.1 YybS family protein -
  QPL84_RS26935 (QPL84_26935) rpsR 5229813..5230046 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  QPL84_RS26940 (QPL84_26940) ssbA 5230091..5230612 (-) 522 WP_000981965.1 single-stranded DNA-binding protein Machinery gene
  QPL84_RS26945 (QPL84_26945) rpsF 5230639..5230929 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  QPL84_RS26950 (QPL84_26950) ychF 5231121..5232221 (-) 1101 WP_000524664.1 redox-regulated ATPase YchF -
  QPL84_RS26955 (QPL84_26955) - 5232336..5232533 (-) 198 WP_000435485.1 DUF951 domain-containing protein -
  QPL84_RS26960 (QPL84_26960) - 5232554..5233435 (-) 882 WP_000365117.1 mechanosensitive ion channel family protein -
  QPL84_RS26965 (QPL84_26965) yyaC 5233695..5234291 (+) 597 WP_001020736.1 spore protease YyaC -
  QPL84_RS26970 (QPL84_26970) spo0J 5234312..5235163 (-) 852 WP_001051819.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18741.50 Da        Isoelectric Point: 4.9222

>NTDB_id=838445 QPL84_RS26940 WP_000981965.1 5230091..5230612(-) (ssbA) [Bacillus toyonensis strain Puebla_S2]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNSGNTGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=838445 QPL84_RS26940 WP_000981965.1 5230091..5230612(-) (ssbA) [Bacillus toyonensis strain Puebla_S2]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACTCAGGTAACACTGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCGAATGTT
GGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.886

100

0.711
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

35.165

100

0.37