Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QPL83_RS28885 Genome accession   NZ_CP126524
Coordinates   5295792..5296313 (-) Length   173 a.a.
NCBI ID   WP_090863373.1    Uniprot ID   -
Organism   Bacillus toyonensis strain Monterrey_S3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5290792..5301313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL83_RS28865 (QPL83_28865) rplI 5292003..5292449 (-) 447 WP_000864222.1 50S ribosomal protein L9 -
  QPL83_RS28870 (QPL83_28870) - 5292446..5294419 (-) 1974 WP_001113905.1 DHH family phosphoesterase -
  QPL83_RS28875 (QPL83_28875) - 5294498..5295433 (-) 936 WP_000814850.1 YybS family protein -
  QPL83_RS28880 (QPL83_28880) rpsR 5295514..5295747 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  QPL83_RS28885 (QPL83_28885) ssbA 5295792..5296313 (-) 522 WP_090863373.1 single-stranded DNA-binding protein Machinery gene
  QPL83_RS28890 (QPL83_28890) rpsF 5296340..5296630 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  QPL83_RS28895 (QPL83_28895) ychF 5296822..5297922 (-) 1101 WP_000524664.1 redox-regulated ATPase YchF -
  QPL83_RS28900 (QPL83_28900) - 5298037..5298234 (-) 198 WP_000435485.1 DUF951 domain-containing protein -
  QPL83_RS28905 (QPL83_28905) - 5298255..5299136 (-) 882 WP_284555625.1 mechanosensitive ion channel family protein -
  QPL83_RS28910 (QPL83_28910) yyaC 5299396..5299992 (+) 597 WP_001020736.1 spore protease YyaC -
  QPL83_RS28915 (QPL83_28915) spo0J 5300013..5300864 (-) 852 WP_001051819.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18727.47 Da        Isoelectric Point: 4.9222

>NTDB_id=838396 QPL83_RS28885 WP_090863373.1 5295792..5296313(-) (ssbA) [Bacillus toyonensis strain Monterrey_S3]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNSGNSGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=838396 QPL83_RS28885 WP_090863373.1 5295792..5296313(-) (ssbA) [Bacillus toyonensis strain Monterrey_S3]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACTCAGGTAACTCTGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCGAATGTT
GGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.621

100

0.723
  ssb Latilactobacillus sakei subsp. sakei 23K

56.742

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.464

100

0.382