Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QOM09_RS27410 Genome accession   NZ_CP126474
Coordinates   5332647..5333168 (-) Length   173 a.a.
NCBI ID   WP_053513689.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain DHC4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5327647..5338168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM09_RS27390 (QOM09_27390) rplI 5328857..5329303 (-) 447 WP_000864228.1 50S ribosomal protein L9 -
  QOM09_RS27395 (QOM09_27395) - 5329300..5331273 (-) 1974 WP_053513687.1 DHH family phosphoesterase -
  QOM09_RS27400 (QOM09_27400) - 5331352..5332287 (-) 936 WP_000806422.1 YybS family protein -
  QOM09_RS27405 (QOM09_27405) rpsR 5332368..5332601 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  QOM09_RS27410 (QOM09_27410) ssbA 5332647..5333168 (-) 522 WP_053513689.1 single-stranded DNA-binding protein Machinery gene
  QOM09_RS27415 (QOM09_27415) rpsF 5333195..5333485 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  QOM09_RS27420 (QOM09_27420) ychF 5333677..5334777 (-) 1101 WP_000524672.1 redox-regulated ATPase YchF -
  QOM09_RS27425 (QOM09_27425) - 5334893..5335090 (-) 198 WP_000435485.1 DUF951 domain-containing protein -
  QOM09_RS27430 (QOM09_27430) - 5335111..5335992 (-) 882 WP_053513690.1 mechanosensitive ion channel family protein -
  QOM09_RS27435 (QOM09_27435) yyaC 5336252..5336848 (+) 597 WP_053513691.1 spore protease YyaC -
  QOM09_RS27440 (QOM09_27440) spo0J 5336869..5337720 (-) 852 WP_001051832.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18793.58 Da        Isoelectric Point: 4.9327

>NTDB_id=838108 QOM09_RS27410 WP_053513689.1 5332647..5333168(-) (ssbA) [Bacillus thuringiensis strain DHC4]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=838108 QOM09_RS27410 WP_053513689.1 5332647..5333168(-) (ssbA) [Bacillus thuringiensis strain DHC4]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.316

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

36.813

100

0.387