Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QLQ03_RS08760 Genome accession   NZ_CP126456
Coordinates   1680047..1681159 (+) Length   370 a.a.
NCBI ID   WP_007497487.1    Uniprot ID   A0A9X0KBN2
Organism   Bacillus altitudinis strain KRS010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1675047..1686159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ03_RS08735 rnpA 1675798..1676157 (-) 360 WP_008347592.1 ribonuclease P protein component -
  QLQ03_RS08740 rpmH 1676236..1676370 (-) 135 WP_008360908.1 50S ribosomal protein L34 -
  QLQ03_RS08745 dnaA 1676991..1678331 (+) 1341 WP_008347594.1 chromosomal replication initiator protein DnaA -
  QLQ03_RS08750 dnaN 1678528..1679664 (+) 1137 WP_284565294.1 DNA polymerase III subunit beta -
  QLQ03_RS08755 yaaA 1679815..1680030 (+) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  QLQ03_RS08760 recF 1680047..1681159 (+) 1113 WP_007497487.1 DNA replication/repair protein RecF Machinery gene
  QLQ03_RS08765 - 1681177..1681422 (+) 246 WP_008360920.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  QLQ03_RS08770 gyrB 1681480..1683396 (+) 1917 WP_025206585.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QLQ03_RS08775 gyrA 1683631..1686135 (+) 2505 WP_046526899.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42574.65 Da        Isoelectric Point: 7.1297

>NTDB_id=837901 QLQ03_RS08760 WP_007497487.1 1680047..1681159(+) (recF) [Bacillus altitudinis strain KRS010]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=837901 QLQ03_RS08760 WP_007497487.1 1680047..1681159(+) (recF) [Bacillus altitudinis strain KRS010]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAGCCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGAAGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTTGTCACCACTACGAGTGT
TGAAGGCATCGACCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.198

99.73

0.83