Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VLJ87_RS26725 Genome accession   NZ_CP141770
Coordinates   5817686..5818183 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PA14-GFP     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5812686..5823183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VLJ87_RS26705 pchD 5813470..5815113 (+) 1644 WP_003137468.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  VLJ87_RS26710 pchC 5815110..5815865 (+) 756 WP_003137465.1 pyochelin biosynthesis editing thioesterase PchC -
  VLJ87_RS26715 pchB 5815865..5816170 (+) 306 WP_003137464.1 isochorismate lyase PchB -
  VLJ87_RS26720 pchA 5816167..5817597 (+) 1431 WP_003129314.1 isochorismate synthase PchA -
  VLJ87_RS26725 ssb 5817686..5818183 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  VLJ87_RS26730 - 5818200..5819588 (-) 1389 WP_003103910.1 MFS transporter -
  VLJ87_RS26735 uvrA 5819802..5822639 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  VLJ87_RS26740 bfr 5822711..5823175 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=837761 VLJ87_RS26725 WP_003114685.1 5817686..5818183(-) (ssb) [Pseudomonas aeruginosa strain PA14-GFP]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=837761 VLJ87_RS26725 WP_003114685.1 5817686..5818183(-) (ssb) [Pseudomonas aeruginosa strain PA14-GFP]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515