Detailed information NTG0837754

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: QN096_RS10075
• Genome accession: NZ_CP126342
• Coordinates: 2153447..2154661 (+)
• Length: 404 a.a.
• NCBI ID: WP_174244726.1
• Uniprot ID: -
• Organism: Pseudomonas otitidis strain TL17
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2148447..2159661

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QN096_RS10050 (QN096_10050)	-	2148586..2148975 (-)	390	WP_284548908.1	GtrA family protein	-
QN096_RS10055 (QN096_10055)	-	2148972..2149973 (-)	1002	WP_284548910.1	glycosyltransferase family 2 protein	-
QN096_RS10060 (QN096_10060)	-	2149966..2151459 (-)	1494	WP_284548912.1	glycosyltransferase family 39 protein	-
QN096_RS10065 (QN096_10065)	-	2151602..2152906 (-)	1305	WP_044409045.1	PAS domain-containing methyl-accepting chemotaxis protein	-
QN096_RS10070 (QN096_10070)	-	2153025..2153303 (-)	279	WP_044409048.1	peptidylprolyl isomerase	-
QN096_RS10075 (QN096_10075)	pilU	2153447..2154661 (+)	1215	WP_174244726.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
QN096_RS10080 (QN096_10080)	-	2154673..2155341 (-)	669	WP_284548920.1	hypothetical protein	-
QN096_RS10085 (QN096_10085)	-	2155475..2156209 (-)	735	WP_284548922.1	transporter substrate-binding domain-containing protein	-
QN096_RS10090 (QN096_10090)	-	2156295..2156936 (-)	642	WP_243899194.1	alpha/beta fold hydrolase	-
QN096_RS10095 (QN096_10095)	-	2157001..2157792 (-)	792	WP_044409054.1	crotonase/enoyl-CoA hydratase family protein	-

Sequence

Protein

• Length: 404 a.a.
• Molecular weight: 44460.86 Da
• Isoelectric Point: 6.6002

>NTDB_id=837754 QN096_RS10075 WP_174244726.1 2153447..2154661(+) (pilU) [Pseudomonas otitidis strain TL17]
MDLPSMLKVLASQDGSDLYLSTGAPPCAKFNGVLKPLSADPLKPGDVARIAESIMDPEQRVEFNHELEMNLAISVPNVGR
FRINIFKQRNEVSIVARNIKLDIPRFEDLKLPEVLLKVVMEKRGLVLFVGGTGSGKSTSLAALIDYRNRNSGGHIITIED
PVEYVHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVRTSDGKRRAAVEVLLGTSTISDLIKRGDFSSIKEIMEKSKALGMQTFDQAL
FDLVVEGAISEDEAIKNADSANNLRLKLKLYRDGPAPAPTPAPAAAPTPPPAATRTQDAASWGLELKLEELPEETPPEDP
GKHF

Nucleotide

• Length: 1215 bp

>NTDB_id=837754 QN096_RS10075 WP_174244726.1 2153447..2154661(+) (pilU) [Pseudomonas otitidis strain TL17]
ATGGATCTCCCTTCGATGCTGAAGGTCCTTGCCTCCCAGGATGGCTCGGACCTCTACCTGTCCACCGGCGCGCCGCCCTG
CGCCAAGTTCAATGGCGTGCTCAAGCCGCTGAGCGCCGACCCGCTCAAGCCGGGGGATGTCGCGCGTATCGCCGAGTCGA
TCATGGACCCGGAGCAGCGCGTCGAATTCAACCATGAGCTGGAAATGAACCTGGCGATCTCGGTGCCCAACGTGGGGCGC
TTCCGCATCAACATCTTCAAGCAGCGCAACGAGGTCTCCATCGTTGCGCGCAACATCAAGCTGGACATCCCCCGCTTCGA
GGACCTCAAGCTGCCCGAGGTGCTGCTCAAGGTGGTGATGGAGAAGCGCGGCCTGGTGCTCTTCGTCGGCGGCACCGGCT
CCGGCAAGTCCACCTCCCTGGCGGCGCTGATCGACTACCGCAACCGCAACAGCGGCGGGCACATCATCACCATCGAGGAC
CCGGTGGAGTACGTGCACCGGCACAAGAAATCCATCATCAACCAGCGCGAGGTGGGGGTGGACACCCGCAGCTTCCACGC
GGCGTTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTCATTGGCGAGATCCGCGACCGCGAGACCATGGAGCACG
CCCTGGCCTTCGCCGACACCGGCCACCTGGCCATTTCCACCCTGCACGCGAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCCGAGGAGCGCCGGCCGCAGTTGCTCAACGACCTGGGCAACAACCTCAAGGCCTTCGTCTCCCAACG
CCTGGTGCGCACCTCGGACGGCAAGCGTCGCGCGGCGGTGGAGGTGCTGCTGGGCACTTCCACCATCAGCGACCTGATCA
AGCGCGGTGACTTCAGCTCCATCAAGGAGATCATGGAGAAGTCCAAGGCCCTGGGCATGCAGACCTTCGACCAGGCGCTG
TTCGACCTGGTGGTGGAAGGTGCCATCAGCGAGGACGAGGCGATCAAGAACGCCGACTCCGCCAACAACCTGCGCCTCAA
GCTGAAGCTCTACCGCGACGGCCCGGCTCCCGCACCGACGCCCGCTCCCGCTGCCGCACCCACCCCGCCACCGGCCGCGA
CCCGTACCCAGGACGCAGCCAGCTGGGGGCTGGAGCTGAAGCTGGAGGAGCTGCCCGAGGAAACGCCGCCGGAAGATCCG
GGCAAGCATTTCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (112-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	56.125	86.881	0.488
pilU	Acinetobacter baylyi ADP1	52.925	88.861	0.47
pilU	Vibrio cholerae strain A1552	52.125	87.376	0.455
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	38.83	93.069	0.361