Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QN092_RS18815 Genome accession   NZ_CP126335
Coordinates   3968619..3969146 (+) Length   175 a.a.
NCBI ID   WP_072070932.1    Uniprot ID   A0A6G6SRL5
Organism   Proteus vulgaris strain TAF3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3963619..3974146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN092_RS18810 (QN092_18810) uvrA 3965532..3968366 (-) 2835 WP_072070931.1 excinuclease ABC subunit UvrA -
  QN092_RS18815 (QN092_18815) ssb 3968619..3969146 (+) 528 WP_072070932.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QN092_RS18820 (QN092_18820) zur 3969334..3969864 (+) 531 WP_072070933.1 zinc uptake transcriptional repressor Zur -
  QN092_RS18825 (QN092_18825) - 3969898..3970203 (-) 306 WP_072070950.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QN092_RS18830 (QN092_18830) - 3970193..3970447 (-) 255 WP_072070934.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  QN092_RS18835 (QN092_18835) lexA 3970608..3971219 (-) 612 WP_072070935.1 transcriptional repressor LexA -
  QN092_RS18840 (QN092_18840) - 3971347..3971718 (-) 372 WP_006536373.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18904.94 Da        Isoelectric Point: 4.9468

>NTDB_id=837672 QN092_RS18815 WP_072070932.1 3968619..3969146(+) (ssb) [Proteus vulgaris strain TAF3]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGSMQMLGGRGGQDSAPSQGGQGGWGQPQQPQASQQFSGGAQSRPAQQPAAAPA
PNNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=837672 QN092_RS18815 WP_072070932.1 3968619..3969146(+) (ssb) [Proteus vulgaris strain TAF3]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
CGGTGCAGTTGCCAACCTAACACTGGCAACATCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGCAAATTAGCTGAAATTGCAGGCGAATATCTGCGTAAAGGTTCACAAGTGTATATC
GAAGGTCAATTACAAACACGTAAATGGCAAGACCAAAGTGGTCAAGACAGATATAGCACTGAAGTTGTCGTTAACATCGG
TGGCTCAATGCAGATGTTAGGTGGTCGTGGTGGTCAAGATAGTGCGCCTTCACAAGGTGGTCAAGGCGGTTGGGGTCAAC
CACAACAGCCACAAGCATCACAACAATTTAGCGGTGGTGCGCAATCTCGCCCAGCACAACAACCCGCAGCAGCTCCAGCA
CCGAACAATGAACCTCCAATGGATTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6SRL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.973

100

0.771
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.6
  ssb Neisseria meningitidis MC58

48.045

100

0.491
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.491