Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QN092_RS07200 Genome accession   NZ_CP126335
Coordinates   1583032..1583484 (-) Length   150 a.a.
NCBI ID   WP_284551590.1    Uniprot ID   -
Organism   Proteus vulgaris strain TAF3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1578032..1588484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN092_RS07170 (QN092_07170) - 1578684..1579133 (-) 450 WP_072069874.1 NUDIX hydrolase -
  QN092_RS07175 (QN092_07175) rluE 1579126..1579755 (-) 630 WP_072069873.1 23S rRNA pseudouridine(2457) synthase RluE -
  QN092_RS07180 (QN092_07180) icd 1579894..1581147 (+) 1254 WP_006537208.1 NADP-dependent isocitrate dehydrogenase -
  QN092_RS07185 (QN092_07185) - 1581268..1582395 (-) 1128 WP_284551588.1 site-specific integrase -
  QN092_RS07190 (QN092_07190) - 1582376..1582618 (-) 243 WP_036894694.1 excisionase -
  QN092_RS07195 (QN092_07195) - 1582727..1582936 (-) 210 WP_284551589.1 hypothetical protein -
  QN092_RS07200 (QN092_07200) ssb 1583032..1583484 (-) 453 WP_284551590.1 single-stranded DNA-binding protein Machinery gene
  QN092_RS07205 (QN092_07205) - 1583543..1584370 (-) 828 WP_284551591.1 DUF2303 family protein -
  QN092_RS07210 (QN092_07210) - 1584436..1584810 (-) 375 WP_006533955.1 hypothetical protein -
  QN092_RS07215 (QN092_07215) - 1585146..1585349 (-) 204 WP_198630290.1 hypothetical protein -
  QN092_RS07220 (QN092_07220) - 1585702..1586364 (-) 663 WP_198630289.1 helix-turn-helix transcriptional regulator -
  QN092_RS07225 (QN092_07225) - 1586405..1586617 (+) 213 WP_109395844.1 YdaS family helix-turn-helix protein -
  QN092_RS07230 (QN092_07230) - 1586687..1587145 (+) 459 WP_109400941.1 YmfL family putative regulatory protein -
  QN092_RS07235 (QN092_07235) - 1587234..1587413 (+) 180 WP_284551592.1 hypothetical protein -
  QN092_RS07240 (QN092_07240) - 1587403..1587582 (+) 180 WP_069369408.1 DUF4222 domain-containing protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16431.40 Da        Isoelectric Point: 5.8901

>NTDB_id=837665 QN092_RS07200 WP_284551590.1 1583032..1583484(-) (ssb) [Proteus vulgaris strain TAF3]
MANGSVNKVILIGNLGRDPEIRYLPSGGAVANLAVATSENWRDKQTGENREKTEWHRVVLFGKLADIASGYLCKGSQIYI
EGQLQTREWDDNGVKRYTTEIVVKVGGSMQMLGGASKSAGSQLAQQNQLTTQNQAKSNQPPMDFDDDIPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=837665 QN092_RS07200 WP_284551590.1 1583032..1583484(-) (ssb) [Proteus vulgaris strain TAF3]
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGTAATTTAGGGCGCGATCCTGAAATTCGCTATCTTCCGAGTGG
TGGTGCTGTTGCTAATTTAGCTGTGGCCACAAGTGAAAATTGGCGTGATAAACAAACGGGTGAAAATCGCGAAAAAACAG
AATGGCATCGGGTCGTTCTGTTTGGAAAGCTTGCAGATATCGCCAGTGGCTATTTGTGCAAAGGTTCTCAAATTTATATT
GAGGGCCAACTACAAACGCGCGAGTGGGATGATAACGGTGTTAAACGTTATACAACAGAAATTGTTGTAAAAGTTGGTGG
TTCGATGCAGATGCTAGGTGGTGCTAGTAAATCAGCAGGATCACAACTGGCACAGCAAAACCAGCTAACTACCCAAAATC
AAGCCAAAAGTAATCAGCCACCAATGGATTTTGATGATGATATTCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.062

100

0.673
  ssb Glaesserella parasuis strain SC1401

47.222

100

0.567
  ssb Neisseria meningitidis MC58

41.243

100

0.487
  ssb Neisseria gonorrhoeae MS11

40.678

100

0.48