Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U8327_RS12570 Genome accession   NZ_CP141765
Coordinates   2624284..2624820 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain HYM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2619284..2629820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8327_RS12550 (U8327_12550) aphA 2619572..2620285 (+) 714 WP_001226928.1 acid phosphatase AphA -
  U8327_RS12555 (U8327_12555) yjbQ 2620396..2620812 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  U8327_RS12560 (U8327_12560) yjbR 2620816..2621172 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  U8327_RS12565 (U8327_12565) uvrA 2621207..2624029 (-) 2823 WP_000357731.1 excinuclease ABC subunit UvrA Machinery gene
  U8327_RS12570 (U8327_12570) ssb 2624284..2624820 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  U8327_RS12575 (U8327_12575) yjcB 2624919..2625200 (-) 282 WP_001295689.1 YjcB family protein -
  U8327_RS12580 (U8327_12580) pdeC 2625630..2627216 (+) 1587 WP_000019576.1 c-di-GMP phosphodiesterase PdeC -
  U8327_RS12585 (U8327_12585) soxS 2627219..2627542 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  U8327_RS12590 (U8327_12590) soxR 2627628..2628092 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=837570 U8327_RS12570 WP_000168305.1 2624284..2624820(+) (ssb) [Escherichia coli strain HYM1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=837570 U8327_RS12570 WP_000168305.1 2624284..2624820(+) (ssb) [Escherichia coli strain HYM1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGTGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489