Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   QN061_RS13940 Genome accession   NZ_CP126305
Coordinates   2967117..2967749 (+) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio fluvialis strain SD21SC3889PM     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2962117..2972749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN061_RS13915 (QN061_13915) - 2962128..2964050 (+) 1923 WP_020329464.1 ABC transporter ATP-binding protein -
  QN061_RS13920 (QN061_13920) - 2964047..2964520 (+) 474 WP_020329463.1 TIGR02444 family protein -
  QN061_RS13925 (QN061_13925) - 2964633..2965610 (+) 978 WP_020329462.1 hydrolase -
  QN061_RS13930 (QN061_13930) - 2965702..2965911 (+) 210 WP_020329461.1 YheU family protein -
  QN061_RS13935 (QN061_13935) - 2966006..2966875 (+) 870 WP_004728583.1 phosphoribulokinase -
  QN061_RS13940 (QN061_13940) crp 2967117..2967749 (+) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  QN061_RS13945 (QN061_13945) - 2967869..2968663 (-) 795 WP_020329460.1 DUF1338 domain-containing protein -
  QN061_RS13950 (QN061_13950) astD 2968849..2970306 (-) 1458 WP_020329459.1 succinylglutamate-semialdehyde dehydrogenase -
  QN061_RS13955 (QN061_13955) astA 2970340..2971359 (-) 1020 WP_020329458.1 arginine N-succinyltransferase -
  QN061_RS13960 (QN061_13960) - 2971459..2972670 (-) 1212 WP_020329456.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=837436 QN061_RS13940 WP_004728582.1 2967117..2967749(+) (crp) [Vibrio fluvialis strain SD21SC3889PM]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=837436 QN061_RS13940 WP_004728582.1 2967117..2967749(+) (crp) [Vibrio fluvialis strain SD21SC3889PM]
ATGGTTCTAGGTAAACCTCAAACCGACCCGACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTGAACCAAGGTGACTTCATCGGTGAGCTTGGCTTGTTTGAAGAAGGT
CAGGAGCGTACTGCCTGGGTTCGTGCAAAATCTCCTTGTGAAGTCGCGGAAATTTCATTCAAGAAATTCCGTCAGCTGAT
TCAGGTTAACCCGGACATCCTAATGCGCCTGTCTGGCCAGATGGCTCGCCGTCTGCAAGTGACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCCTAGACGTAACTGGTCGCATCGCGCAGACCCTACTGAACCTGGCGAAACAACCAGACGCCATGACCCAC
CCAGACGGTATGCAAATCAAGATCACTCGTCAGGAAATCGGTCAAATCGTTGGTTGTTCTCGTGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATTTCTGCACACGGTAAGACTATCGTGGTATACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467