Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   VA249_RS09770 Genome accession   NZ_AP024165
Coordinates   2127326..2129602 (-) Length   758 a.a.
NCBI ID   WP_221067843.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain 04Ya108     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2122326..2134602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA249_RS09750 (VYA_18370) kdsB 2123615..2124373 (-) 759 WP_221067841.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VA249_RS09755 (VYA_18380) - 2124373..2124552 (-) 180 WP_128810529.1 Trm112 family protein -
  VA249_RS09760 (VYA_18390) lpxK 2124533..2125540 (-) 1008 WP_221067842.1 tetraacyldisaccharide 4'-kinase -
  VA249_RS09765 (VYA_18400) msbA 2125546..2127294 (-) 1749 WP_128810527.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  VA249_RS09770 comEC 2127326..2129602 (-) 2277 WP_221067843.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VA249_RS09775 (VYA_18420) - 2129611..2130120 (+) 510 WP_128810525.1 DUF2062 domain-containing protein -
  VA249_RS09780 (VYA_18430) lolE 2130323..2131567 (-) 1245 WP_221067844.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  VA249_RS09785 (VYA_18440) lolD 2131570..2132277 (-) 708 WP_221067845.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  VA249_RS09790 (VYA_18450) lolC 2132270..2133478 (-) 1209 WP_221067846.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  VA249_RS09795 (VYA_18460) - 2133742..2134311 (+) 570 WP_221067847.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 758 a.a.        Molecular weight: 85389.59 Da        Isoelectric Point: 9.4609

>NTDB_id=83727 VA249_RS09770 WP_221067843.1 2127326..2129602(-) (comEC) [Vibrio alfacsensis strain 04Ya108]
MTLSDKSWTLVLFVVTVISSAWWPTMPDWRWTLLGMITIGSIIKWRQGVICIGAILGAMVVVVHGNIMEHHKQALFQAGE
DLTIIGTVDSPFTQISHGYEGIVSVSHADSKSLLPFAKPKIRLITPFPLSVNSHFTTQVSMKAITGLRNEAGFDIEQQSL
GNGVLARAVVSSQARWIIRTHTSVRQSIIQSVNREIRHLHHFPLISALAFSDRTRLTHQHWQQLRDSGLLHLISISGLHI
GMAYAFGASIGVCARYMASNLLYLPAVIGLIAAFSYAWLADFSLPTTRAFSVCAIYVMLKYFLVHWSAWRVLLLAVAIQL
SMSPFAFFSMSFWLSYLSVAAVLLAVNEMQQGSKGRKQPLLALLKVQFLLTLLIMPISGYFFVGTSLASIFYNLVFIPWF
GFVVVPVMFLALAVSSSLMTSSITYWFPGVLWQLLDWLLWPMTWALEFAQGSWQPLSVEQSSLVLLVCVLFILRRFFDRP
AWMLLSGVVVMLTLPFSKERQGWRLDVLDVGHGLAVLIEKDSHIMLYDTGKAWAGGSIAEQVIRPVLHRRGYNSIDTLVL
SHTDADHAGGRLYLESQFEPSRKLSSQKLLNYQPCVANNNWTWQGLMVEVVWPPKLVNRAYNPHSCVLRITDPQTHFRVL
LTGDIEAISEWLLTRQAEKINSDVMLVPHHGSKSSSNPKFIHAVNPTLAIASLAKNNQWGMPAESVKAAYQFAGVEWLDT
GHDGQISVFINQDNWYFDTKRRESFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2277 bp        

>NTDB_id=83727 VA249_RS09770 WP_221067843.1 2127326..2129602(-) (comEC) [Vibrio alfacsensis strain 04Ya108]
ATGACTCTCTCAGATAAAAGTTGGACCTTGGTGTTATTTGTAGTAACCGTTATATCGTCAGCATGGTGGCCGACAATGCC
AGATTGGCGATGGACGCTATTGGGAATGATTACTATCGGTTCAATCATAAAATGGCGTCAGGGCGTAATCTGCATAGGAG
CAATTTTGGGCGCTATGGTTGTCGTCGTCCATGGCAATATCATGGAGCATCATAAACAAGCCCTTTTTCAAGCAGGTGAG
GATCTTACCATAATTGGCACAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGTCTCTGTTAGTCA
TGCTGATTCAAAGAGTTTATTACCTTTTGCTAAACCTAAGATCAGGTTGATAACGCCATTTCCGTTATCTGTTAACAGTC
ACTTTACGACACAAGTGTCGATGAAGGCCATCACGGGGTTAAGGAACGAAGCTGGATTCGATATAGAACAACAATCGTTG
GGAAATGGTGTTCTTGCTAGAGCGGTGGTTTCTTCACAAGCGCGATGGATTATTCGGACTCATACTTCTGTTCGGCAAAG
TATTATTCAATCAGTTAATCGCGAGATTAGGCATCTGCATCATTTTCCGCTGATAAGTGCCTTGGCATTCAGTGATCGTA
CTAGGTTGACTCACCAGCATTGGCAGCAGTTACGTGACAGTGGTTTGCTCCATTTGATCTCTATATCCGGTTTGCATATT
GGGATGGCGTACGCTTTTGGCGCATCCATCGGTGTATGTGCTCGTTATATGGCATCAAATTTGTTGTATTTACCTGCGGT
TATAGGTTTGATAGCGGCTTTCTCTTATGCATGGCTAGCTGATTTCTCGTTACCAACAACGCGTGCTTTTTCTGTGTGTG
CGATATACGTGATGCTCAAGTATTTCCTTGTTCATTGGAGTGCTTGGCGTGTTTTATTGCTCGCTGTCGCTATTCAATTG
AGTATGAGTCCATTTGCTTTTTTTAGTATGAGCTTTTGGCTTTCATACCTTTCTGTTGCCGCTGTTTTGCTCGCGGTGAA
TGAGATGCAGCAGGGCAGCAAGGGTAGAAAACAACCGCTTCTAGCGTTACTTAAAGTTCAGTTTTTGCTGACACTTTTGA
TCATGCCTATTAGCGGCTACTTTTTTGTAGGAACAAGTCTAGCCTCTATTTTCTACAATCTTGTTTTTATCCCTTGGTTT
GGTTTTGTGGTTGTTCCAGTGATGTTCCTCGCTCTTGCTGTGTCATCATCACTTATGACCTCATCAATCACATATTGGTT
TCCCGGGGTGCTATGGCAATTATTGGATTGGCTGCTTTGGCCTATGACGTGGGCGTTGGAGTTTGCACAAGGCAGTTGGC
AACCGCTTAGCGTTGAGCAATCATCGTTAGTGTTACTTGTTTGTGTACTTTTTATATTGAGGCGCTTTTTTGACCGGCCT
GCGTGGATGCTATTAAGTGGTGTAGTGGTCATGCTTACGTTGCCATTTTCAAAAGAGAGGCAAGGGTGGCGATTAGACGT
ACTCGATGTTGGGCATGGGTTAGCAGTACTCATAGAAAAAGACAGCCACATTATGTTGTATGACACAGGTAAAGCGTGGG
CCGGTGGCAGTATTGCTGAACAGGTGATTCGGCCTGTATTGCATCGCCGAGGCTATAACTCAATCGACACTTTAGTTTTA
AGCCACACTGATGCCGACCATGCTGGTGGCCGGCTTTATCTTGAGTCCCAGTTTGAACCGAGCAGGAAATTGAGTAGCCA
AAAATTGCTAAATTATCAGCCTTGTGTAGCGAATAATAATTGGACTTGGCAGGGCTTAATGGTAGAAGTGGTGTGGCCAC
CTAAGCTTGTCAATCGCGCATACAACCCTCATTCGTGCGTTCTGCGTATCACGGATCCTCAAACCCATTTTCGAGTCCTA
CTCACTGGAGATATTGAAGCGATAAGTGAGTGGTTGTTAACTCGGCAGGCTGAGAAGATCAACAGTGATGTGATGCTCGT
CCCTCATCATGGCAGTAAAAGCTCATCTAATCCCAAATTTATCCATGCTGTGAATCCGACATTGGCGATTGCGTCACTAG
CAAAAAACAATCAGTGGGGTATGCCAGCAGAAAGTGTAAAAGCGGCATATCAGTTCGCAGGCGTTGAATGGCTGGATACA
GGACATGATGGACAAATCAGCGTGTTTATTAATCAAGATAATTGGTATTTTGATACTAAACGTCGAGAGTCATTTGAGCC
CTGGTATAGGCAGATGCTGCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(510-688)

Competence protein (Competence)

(208-473)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

63.72

100

0.637
  comEC Vibrio parahaemolyticus RIMD 2210633

63.72

100

0.637
  comEC Vibrio cholerae strain A1552

41.953

100

0.42

Multiple sequence alignment