Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P7644_RS00135 Genome accession   NZ_CP126238
Coordinates   29781..30323 (-) Length   180 a.a.
NCBI ID   WP_404300983.1    Uniprot ID   -
Organism   Alicycliphilus denitrificans strain Ylb10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 24781..35323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7644_RS00115 (P7644_00110) - 25804..26892 (-) 1089 WP_404300979.1 4-oxalomesaconate tautomerase -
  P7644_RS00120 (P7644_00115) - 26995..27936 (+) 942 WP_404300980.1 LysR family transcriptional regulator -
  P7644_RS00125 (P7644_00120) mnmA 27933..29054 (+) 1122 WP_404300981.1 tRNA 2-thiouridine(34) synthase MnmA -
  P7644_RS00130 (P7644_00125) - 29087..29542 (-) 456 WP_404300982.1 c-type cytochrome -
  P7644_RS00135 (P7644_00130) ssb 29781..30323 (-) 543 WP_404300983.1 single-stranded DNA-binding protein Machinery gene
  P7644_RS00140 (P7644_00135) - 30472..31653 (-) 1182 WP_404303260.1 MFS transporter -
  P7644_RS00145 (P7644_00140) - 32191..32955 (+) 765 WP_404300984.1 TerC family protein -
  P7644_RS00150 (P7644_00145) - 33004..33360 (+) 357 WP_404300985.1 phage holin family protein -
  P7644_RS00155 (P7644_00150) - 33328..34836 (-) 1509 WP_404303261.1 M48 family metalloprotease -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19182.13 Da        Isoelectric Point: 5.9554

>NTDB_id=837220 P7644_RS00135 WP_404300983.1 29781..30323(-) (ssb) [Alicycliphilus denitrificans strain Ylb10]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVRIATTDRWRDKNTGENKEATEWHSVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQSGQERYTTEIRADTMQMLGSRSGAGGGQGAGGYDDGGYGDGGGGGYEAPRRAAPPQRPAAPPAARPAPAP
VAPAPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=837220 P7644_RS00135 WP_404300983.1 29781..30323(-) (ssb) [Alicycliphilus denitrificans strain Ylb10]
ATGGCATCCGTGAACAAAGTCATCATCGTCGGCAACCTCGGCCGCGACCCCGAAATGCGCACCTTCCCCAGCGGGGACCA
GGTCGCCAACGTGCGCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAGGCCACCGAGTGGC
ACAGCGTGGTCTTCAACGGCCGCCTGGCCGAGATCGTGGGCCAGTATCTGCGCAAGGGCTCGCAGGTGTATGTGGAAGGC
AGTTTGCGCACGCGCAAGTGGACCGACCAGAGCGGCCAGGAGCGCTACACCACCGAGATCCGCGCCGACACCATGCAGAT
GCTGGGCAGCCGCTCCGGGGCCGGCGGCGGCCAGGGCGCTGGCGGCTATGACGACGGCGGCTACGGTGACGGCGGTGGCG
GCGGCTACGAGGCCCCGCGCCGCGCCGCGCCGCCGCAGCGCCCCGCTGCCCCCCCTGCAGCCCGCCCCGCCCCGGCTCCC
GTGGCGCCGGCACCGCGCGCCGCCTCGGGCTTTGACGACATGGACGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.403

100

0.567
  ssb Vibrio cholerae strain A1552

50

100

0.517
  ssb Neisseria gonorrhoeae MS11

44.505

100

0.45
  ssb Neisseria meningitidis MC58

43.956

100

0.444