Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QNM98_RS12415 Genome accession   NZ_CP126226
Coordinates   2531815..2532252 (-) Length   145 a.a.
NCBI ID   WP_043020787.1    Uniprot ID   -
Organism   Bacillus velezensis strain B31     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2526815..2537252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNM98_RS12365 (QNM98_12365) sinI 2527198..2527371 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  QNM98_RS12370 (QNM98_12370) sinR 2527405..2527740 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  QNM98_RS12375 (QNM98_12375) - 2527788..2528573 (-) 786 WP_007408329.1 TasA family protein -
  QNM98_RS12380 (QNM98_12380) - 2528638..2529222 (-) 585 WP_015240205.1 signal peptidase I -
  QNM98_RS12385 (QNM98_12385) tapA 2529194..2529865 (-) 672 WP_284064729.1 amyloid fiber anchoring/assembly protein TapA -
  QNM98_RS12390 (QNM98_12390) - 2530124..2530453 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  QNM98_RS12395 (QNM98_12395) - 2530494..2530673 (-) 180 WP_003153093.1 YqzE family protein -
  QNM98_RS12400 (QNM98_12400) comGG 2530730..2531107 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  QNM98_RS12405 (QNM98_12405) comGF 2531108..2531608 (-) 501 WP_256683588.1 competence type IV pilus minor pilin ComGF -
  QNM98_RS12410 (QNM98_12410) comGE 2531517..2531831 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  QNM98_RS12415 (QNM98_12415) comGD 2531815..2532252 (-) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  QNM98_RS12420 (QNM98_12420) comGC 2532242..2532550 (-) 309 WP_015417818.1 competence type IV pilus major pilin ComGC Machinery gene
  QNM98_RS12425 (QNM98_12425) comGB 2532555..2533592 (-) 1038 WP_015417819.1 competence type IV pilus assembly protein ComGB Machinery gene
  QNM98_RS12430 (QNM98_12430) comGA 2533579..2534649 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  QNM98_RS12435 (QNM98_12435) - 2534842..2535792 (-) 951 WP_015417820.1 magnesium transporter CorA family protein -
  QNM98_RS12440 (QNM98_12440) - 2535938..2537239 (+) 1302 WP_012117986.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16271.77 Da        Isoelectric Point: 10.2475

>NTDB_id=837186 QNM98_RS12415 WP_043020787.1 2531815..2532252(-) (comGD) [Bacillus velezensis strain B31]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPAYTHLAVRQKTELLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=837186 QNM98_RS12415 WP_043020787.1 2531815..2532252(-) (comGD) [Bacillus velezensis strain B31]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGTCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTACACCCACCTTGCCGTGCGGCAAAAAACAGAACTGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGACTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.164

100

0.566