Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QNM98_RS12370 Genome accession   NZ_CP126226
Coordinates   2527405..2527740 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain B31     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2522405..2532740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNM98_RS12350 (QNM98_12350) gcvT 2523011..2524111 (-) 1101 WP_031378949.1 glycine cleavage system aminomethyltransferase GcvT -
  QNM98_RS12355 (QNM98_12355) - 2524535..2526205 (+) 1671 WP_015417810.1 SNF2-related protein -
  QNM98_RS12360 (QNM98_12360) - 2526227..2527021 (+) 795 WP_156240427.1 YqhG family protein -
  QNM98_RS12365 (QNM98_12365) sinI 2527198..2527371 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  QNM98_RS12370 (QNM98_12370) sinR 2527405..2527740 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  QNM98_RS12375 (QNM98_12375) - 2527788..2528573 (-) 786 WP_007408329.1 TasA family protein -
  QNM98_RS12380 (QNM98_12380) - 2528638..2529222 (-) 585 WP_015240205.1 signal peptidase I -
  QNM98_RS12385 (QNM98_12385) tapA 2529194..2529865 (-) 672 WP_284064729.1 amyloid fiber anchoring/assembly protein TapA -
  QNM98_RS12390 (QNM98_12390) - 2530124..2530453 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  QNM98_RS12395 (QNM98_12395) - 2530494..2530673 (-) 180 WP_003153093.1 YqzE family protein -
  QNM98_RS12400 (QNM98_12400) comGG 2530730..2531107 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  QNM98_RS12405 (QNM98_12405) comGF 2531108..2531608 (-) 501 WP_256683588.1 competence type IV pilus minor pilin ComGF -
  QNM98_RS12410 (QNM98_12410) comGE 2531517..2531831 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  QNM98_RS12415 (QNM98_12415) comGD 2531815..2532252 (-) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  QNM98_RS12420 (QNM98_12420) comGC 2532242..2532550 (-) 309 WP_015417818.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=837184 QNM98_RS12370 WP_003153104.1 2527405..2527740(+) (sinR) [Bacillus velezensis strain B31]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=837184 QNM98_RS12370 WP_003153104.1 2527405..2527740(+) (sinR) [Bacillus velezensis strain B31]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991