Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QN242_RS13530 Genome accession   NZ_CP126173
Coordinates   3225527..3226051 (-) Length   174 a.a.
NCBI ID   WP_160970056.1    Uniprot ID   -
Organism   Xanthomonas rydalmerensis strain DAR34882     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3220527..3231051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN242_RS13505 (QN242_13505) - 3220597..3220875 (+) 279 WP_317843422.1 cytochrome c -
  QN242_RS13510 (QN242_13510) - 3220895..3221638 (-) 744 WP_317843423.1 DUF1080 domain-containing protein -
  QN242_RS13515 (QN242_13515) - 3221682..3222254 (-) 573 WP_317843424.1 gluconate 2-dehydrogenase subunit 3 family protein -
  QN242_RS13520 (QN242_13520) - 3222254..3223939 (-) 1686 WP_160970060.1 GMC family oxidoreductase -
  QN242_RS13525 (QN242_13525) - 3223970..3224866 (-) 897 WP_317843425.1 TIM barrel protein -
  QN242_RS13530 (QN242_13530) ssb 3225527..3226051 (-) 525 WP_160970056.1 single-stranded DNA-binding protein Machinery gene
  QN242_RS13535 (QN242_13535) - 3226332..3227330 (+) 999 WP_317843426.1 polyprenyl synthetase family protein -
  QN242_RS13540 (QN242_13540) - 3227512..3228315 (-) 804 WP_317843427.1 dienelactone hydrolase family protein -
  QN242_RS13545 (QN242_13545) murD 3228395..3229828 (-) 1434 WP_317843428.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18635.57 Da        Isoelectric Point: 5.3242

>NTDB_id=837095 QN242_RS13530 WP_160970056.1 3225527..3226051(-) (ssb) [Xanthomonas rydalmerensis strain DAR34882]
MARGINKVILVGNLGNDPDTKYTQAGMAITRISLATTSVRKDKDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGRGEGGGGGMGGGDRPQRSAPPRQERSGMGGGGGGGGQDYAPRRQQPAPQQ
SAPMDDFADDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=837095 QN242_RS13530 WP_160970056.1 3225527..3226051(-) (ssb) [Xanthomonas rydalmerensis strain DAR34882]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCCATCACCCGGATCAGCCTGGCCACCACCAGCGTGCGCAAGGACAAGGACGGCAACCAGCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTCGGAAAGCTCGGTGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGTTCGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGACATCGTCGCCGACGAGATGCAGAT
GCTCGGCGGCCGCGGCGAGGGCGGTGGTGGCGGCATGGGCGGTGGCGACCGTCCGCAGCGCTCGGCGCCGCCGCGCCAGG
AGCGCTCCGGCATGGGCGGCGGTGGCGGTGGTGGCGGGCAGGATTACGCGCCGCGCCGGCAGCAGCCGGCCCCGCAGCAG
TCCGCGCCGATGGACGACTTCGCGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.974

100

0.489
  ssb Glaesserella parasuis strain SC1401

45.355

100

0.477
  ssb Neisseria meningitidis MC58

44

100

0.443
  ssb Neisseria gonorrhoeae MS11

44

100

0.443