Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QN242_RS05000 Genome accession   NZ_CP126173
Coordinates   1193644..1194702 (+) Length   352 a.a.
NCBI ID   WP_017908825.1    Uniprot ID   A0A0J6FVA6
Organism   Xanthomonas rydalmerensis strain DAR34882     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1188644..1199702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN242_RS04985 (QN242_04990) - 1188732..1190021 (+) 1290 WP_160965386.1 citrate synthase -
  QN242_RS04990 (QN242_04995) - 1190199..1190843 (-) 645 WP_160965387.1 hypothetical protein -
  QN242_RS04995 (QN242_05000) - 1190996..1193425 (-) 2430 WP_317844708.1 penicillin-binding protein 1A -
  QN242_RS05000 (QN242_05005) pilM 1193644..1194702 (+) 1059 WP_017908825.1 pilus assembly protein PilM Machinery gene
  QN242_RS05005 (QN242_05010) - 1194702..1195499 (+) 798 WP_160965389.1 PilN domain-containing protein -
  QN242_RS05010 (QN242_05015) - 1195496..1196161 (+) 666 WP_160965390.1 type 4a pilus biogenesis protein PilO -
  QN242_RS05015 (QN242_05020) - 1196158..1196697 (+) 540 WP_160965391.1 pilus assembly protein PilP -
  QN242_RS05020 (QN242_05025) - 1196718..1198637 (+) 1920 WP_184645341.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37696.33 Da        Isoelectric Point: 4.4501

>NTDB_id=837085 QN242_RS05000 WP_017908825.1 1193644..1194702(+) (pilM) [Xanthomonas rydalmerensis strain DAR34882]
MGLIPKSQQPLIGIDISSTAVKLLQLSRNGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTRAKHAAAA
VAGSAVITKVIPMPAELDESELEAQVELEAVNYIPYPIDEVNLDFEVLGVIPNNPEMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADGIVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGMAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVATVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=837085 QN242_RS05000 WP_017908825.1 1193644..1194702(+) (pilM) [Xanthomonas rydalmerensis strain DAR34882]
GTGGGGCTTATCCCAAAGAGTCAGCAACCGCTGATCGGCATCGACATCAGCTCGACTGCGGTCAAGCTGCTGCAGCTTTC
GCGTAACGGCAACCGGTTCCGTGTCGAGCATTACGCCGTCGAACCCTTGCCGCCCAATGCCGTGGTCGAAAAGAACATCG
TCGAGGTCGAGGCGGTGGGCGAGGCGATCCGCCGCGCCGTGACCCGTTCCGGCACCCGCGCCAAGCATGCCGCGGCCGCC
GTGGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTGGACGAGAGCGAACTGGAAGCCCAGGTCGA
GCTGGAGGCGGTGAACTACATCCCGTACCCGATCGACGAAGTGAACCTGGATTTCGAGGTGCTGGGCGTCATCCCCAACA
ACCCCGAGATGGTGCAGGTGCTGCTGGCCGCCTCGCGCTCGGAGAACGTGGAACTGCGCCAGTCGGCCCTTGAACTCGGC
GGCCTGGTGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCGCTGGTGGCCAGCGAATTGCCGGT
GGCCGCCGACGGCATCGTCGCCCTGGTCGACATCGGCGCCACCATGACCACCCTCAACGTCCTGCGCGGCGGGCGTAGCC
TGTACAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTACGGGCTCACCTACGAGGAA
GCCGGCATGGCCAAGCGCCAGGGCGGGCTGCCGGAGAGCTACGAGGTCGAGGTGCTGGAACCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAATTCAACCGGGTCGATCACATCGTCCTGGCCGGCG
GCTGCGCCGCCCTGGCCGGGTTGCCGGAGATGGTGGAGGAGCAACTCGGCGTCGCCACGGTGGTCGCCAATCCGTTGGCG
CAGATGACCCTGGGGCCGAAGGTCCAGGCGCACGCGCTGGCCCAGGATGCGCCGGCGCTGATGATCGCCACCGGCCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6FVA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.42

100

0.514
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

49.716

100

0.497
  pilM Legionella pneumophila strain ERS1305867

47.714

99.432

0.474