Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilL   Type   Machinery gene
Locus tag   JLZ01_RS02695 Genome accession   NZ_AP024155
Coordinates   519813..520286 (+) Length   157 a.a.
NCBI ID   WP_025455782.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM 19855     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 514813..525286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLZ01_RS02670 (TUM19855C_05000) dnaB 515267..516673 (+) 1407 WP_003690896.1 replicative DNA helicase -
  JLZ01_RS02675 (TUM19855C_05010) pilH 516981..517646 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  JLZ01_RS02680 (TUM19855C_05020) pilI 517678..518286 (+) 609 WP_003690898.1 type IV pilus modification protein PilV Machinery gene
  JLZ01_RS02685 (TUM19855C_05030) pilJ 518283..519224 (+) 942 WP_003690899.1 PilW family protein Machinery gene
  JLZ01_RS02690 (TUM19855C_05040) pilK 519203..519811 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  JLZ01_RS02695 (TUM19855C_05050) pilL 519813..520286 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  JLZ01_RS02700 (TUM19855C_05060) - 520898..521343 (-) 446 Protein_520 AzlC family ABC transporter permease -
  JLZ01_RS02705 (TUM19855C_05070) dut 521509..521961 (+) 453 WP_003690909.1 dUTP diphosphatase -
  JLZ01_RS02710 (TUM19855C_05080) dapC 522039..523226 (+) 1188 WP_003690911.1 succinyldiaminopimelate transaminase -
  JLZ01_RS02715 (TUM19855C_05100) yaaA 523382..524161 (+) 780 WP_003690913.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 157 a.a.        Molecular weight: 17506.38 Da        Isoelectric Point: 9.8238

>NTDB_id=83684 JLZ01_RS02695 WP_025455782.1 519813..520286(+) (pilL) [Neisseria gonorrhoeae strain TUM 19855]
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQTIKSKLEIFVSGYKM
NPKIAKKYSVSVKFVDAEKPRVYRLVGVPNVGTGYTLSVWMNSVGDGYKCRDAASAKAYKEQLSGDGGCEALSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=83684 JLZ01_RS02695 WP_025455782.1 519813..520286(+) (pilL) [Neisseria gonorrhoeae strain TUM 19855]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAAGTTTGTCGATGCGGAAAAACCAAGGGTATACAGGTTGGTCGG
TGTTCCGAACGTGGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCGGCAAAGGCCTATAAAGAGCAGTTGTCCGGAGACGGTGGTTGTGAAGCCTTATCCAACCGTAAGAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

89.172

100

0.892

  pilX Neisseria meningitidis 8013

85.987

100

0.86


Multiple sequence alignment