Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | JLZ01_RS02685 | Genome accession | NZ_AP024155 |
| Coordinates | 518283..519224 (+) | Length | 313 a.a. |
| NCBI ID | WP_003690899.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain TUM 19855 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 515267..571341 | 518283..519224 | within | 0 |
Gene organization within MGE regions
Location: 515267..571341
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JLZ01_RS02670 (TUM19855C_05000) | dnaB | 515267..516673 (+) | 1407 | WP_003690896.1 | replicative DNA helicase | - |
| JLZ01_RS02675 (TUM19855C_05010) | pilH | 516981..517646 (+) | 666 | WP_003690897.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| JLZ01_RS02680 (TUM19855C_05020) | pilI | 517678..518286 (+) | 609 | WP_003690898.1 | type IV pilus modification protein PilV | Machinery gene |
| JLZ01_RS02685 (TUM19855C_05030) | pilJ | 518283..519224 (+) | 942 | WP_003690899.1 | PilW family protein | Machinery gene |
| JLZ01_RS02690 (TUM19855C_05040) | pilK | 519203..519811 (+) | 609 | WP_003690900.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| JLZ01_RS02695 (TUM19855C_05050) | pilL | 519813..520286 (+) | 474 | WP_025455782.1 | PilX family type IV pilin | Machinery gene |
| JLZ01_RS02700 (TUM19855C_05060) | - | 520898..521343 (-) | 446 | Protein_520 | AzlC family ABC transporter permease | - |
| JLZ01_RS02705 (TUM19855C_05070) | dut | 521509..521961 (+) | 453 | WP_003690909.1 | dUTP diphosphatase | - |
| JLZ01_RS02710 (TUM19855C_05080) | dapC | 522039..523226 (+) | 1188 | WP_003690911.1 | succinyldiaminopimelate transaminase | - |
| JLZ01_RS02715 (TUM19855C_05100) | yaaA | 523382..524161 (+) | 780 | WP_003690913.1 | peroxide stress protein YaaA | - |
| JLZ01_RS02730 (TUM19855C_05110) | - | 524692..525888 (+) | 1197 | WP_003704323.1 | integrase arm-type DNA-binding domain-containing protein | - |
| JLZ01_RS02735 (TUM19855C_05120) | - | 526244..526513 (-) | 270 | WP_003687928.1 | hypothetical protein | - |
| JLZ01_RS02740 (TUM19855C_05140) | - | 526708..527391 (-) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| JLZ01_RS11940 | - | 527705..527938 (-) | 234 | Protein_527 | hypothetical protein | - |
| JLZ01_RS02750 (TUM19855C_05160) | - | 528049..528264 (-) | 216 | WP_003691538.1 | hypothetical protein | - |
| JLZ01_RS02755 (TUM19855C_05170) | - | 528316..528807 (-) | 492 | WP_003691537.1 | siphovirus Gp157 family protein | - |
| JLZ01_RS02760 (TUM19855C_05180) | - | 528804..528986 (-) | 183 | WP_003691535.1 | hypothetical protein | - |
| JLZ01_RS02765 (TUM19855C_05190) | - | 529126..529812 (-) | 687 | WP_003691532.1 | phage replication initiation protein, NGO0469 family | - |
| JLZ01_RS02770 (TUM19855C_05200) | - | 529881..530042 (-) | 162 | WP_003691530.1 | hypothetical protein | - |
| JLZ01_RS02775 (TUM19855C_05210) | - | 530039..530317 (-) | 279 | WP_003691529.1 | NGO1622 family putative holin | - |
| JLZ01_RS02780 (TUM19855C_05220) | - | 530470..530802 (-) | 333 | WP_003691528.1 | hypothetical protein | - |
| JLZ01_RS02785 (TUM19855C_05230) | - | 530943..531218 (-) | 276 | WP_003691527.1 | hypothetical protein | - |
| JLZ01_RS02790 (TUM19855C_05240) | - | 531215..531691 (-) | 477 | WP_003691526.1 | hypothetical protein | - |
| JLZ01_RS02795 (TUM19855C_05250) | - | 531724..531924 (-) | 201 | WP_003692842.1 | hypothetical protein | - |
| JLZ01_RS02800 (TUM19855C_05260) | - | 532122..532535 (-) | 414 | WP_003687963.1 | hypothetical protein | - |
| JLZ01_RS02805 (TUM19855C_05270) | - | 532532..532993 (-) | 462 | WP_003687965.1 | helix-turn-helix transcriptional regulator | - |
| JLZ01_RS02810 (TUM19855C_05280) | - | 533010..533447 (-) | 438 | WP_003687967.1 | hypothetical protein | - |
| JLZ01_RS02815 (TUM19855C_05290) | - | 533562..534278 (-) | 717 | WP_003687969.1 | LexA family transcriptional regulator | - |
| JLZ01_RS02820 (TUM19855C_05300) | - | 534347..534583 (+) | 237 | WP_003687971.1 | Cro/CI family transcriptional regulator | - |
| JLZ01_RS02825 (TUM19855C_05310) | - | 534663..534818 (+) | 156 | WP_047923772.1 | hypothetical protein | - |
| JLZ01_RS02830 (TUM19855C_05320) | - | 534795..534983 (-) | 189 | WP_050157615.1 | hypothetical protein | - |
| JLZ01_RS02835 (TUM19855C_05330) | - | 535157..535384 (+) | 228 | WP_003691442.1 | helix-turn-helix domain-containing protein | - |
| JLZ01_RS02840 (TUM19855C_05340) | - | 535381..536391 (+) | 1011 | WP_014580341.1 | helix-turn-helix domain-containing protein | - |
| JLZ01_RS02845 (TUM19855C_05350) | - | 536403..537182 (+) | 780 | WP_025455804.1 | ATP-binding protein | - |
| JLZ01_RS02850 (TUM19855C_05360) | - | 537175..537462 (+) | 288 | WP_200964840.1 | hypothetical protein | - |
| JLZ01_RS02855 (TUM19855C_05370) | - | 537501..537995 (+) | 495 | WP_003691434.1 | DUF3310 domain-containing protein | - |
| JLZ01_RS02860 (TUM19855C_05380) | - | 538172..538321 (+) | 150 | WP_003689110.1 | hypothetical protein | - |
| JLZ01_RS11490 (TUM19855C_05390) | - | 538350..538631 (+) | 282 | WP_003689109.1 | hypothetical protein | - |
| JLZ01_RS02865 (TUM19855C_05400) | - | 538622..539002 (+) | 381 | WP_017147222.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JLZ01_RS02870 (TUM19855C_05410) | - | 539269..539676 (+) | 408 | WP_003691430.1 | hypothetical protein | - |
| JLZ01_RS02875 (TUM19855C_05420) | - | 539767..540927 (+) | 1161 | WP_003691428.1 | type I restriction endonuclease | - |
| JLZ01_RS02880 (TUM19855C_05430) | - | 541211..542080 (+) | 870 | WP_106158880.1 | Bro-N domain-containing protein | - |
| JLZ01_RS02885 (TUM19855C_05440) | - | 542373..542822 (+) | 450 | WP_003695485.1 | hypothetical protein | - |
| JLZ01_RS02890 (TUM19855C_05450) | terL | 542884..544305 (+) | 1422 | WP_003697216.1 | phage terminase large subunit | - |
| JLZ01_RS02895 (TUM19855C_05460) | - | 544302..546449 (+) | 2148 | WP_003691423.1 | phage portal protein | - |
| JLZ01_RS02900 (TUM19855C_05470) | - | 546517..547674 (+) | 1158 | WP_010360058.1 | HK97 family phage prohead protease | - |
| JLZ01_RS02905 (TUM19855C_05480) | - | 547715..549214 (+) | 1500 | WP_003689084.1 | hypothetical protein | - |
| JLZ01_RS02910 (TUM19855C_05490) | - | 549221..549583 (+) | 363 | WP_003689082.1 | hypothetical protein | - |
| JLZ01_RS02915 (TUM19855C_05500) | - | 549586..550116 (+) | 531 | WP_003689080.1 | head-tail connector protein | - |
| JLZ01_RS02920 (TUM19855C_05510) | - | 550116..550598 (+) | 483 | WP_010360061.1 | HK97 gp10 family phage protein | - |
| JLZ01_RS02925 (TUM19855C_05520) | - | 550595..551023 (+) | 429 | WP_003689076.1 | hypothetical protein | - |
| JLZ01_RS02930 (TUM19855C_05530) | - | 551049..551822 (+) | 774 | WP_003692869.1 | hypothetical protein | - |
| JLZ01_RS02935 (TUM19855C_05540) | - | 551883..552212 (+) | 330 | WP_003689072.1 | hypothetical protein | - |
| JLZ01_RS02940 (TUM19855C_05550) | - | 552224..552490 (+) | 267 | WP_003689070.1 | hypothetical protein | - |
| JLZ01_RS02945 (TUM19855C_05560) | - | 552490..553089 (+) | 600 | WP_003691415.1 | DUF2460 domain-containing protein | - |
| JLZ01_RS02950 (TUM19855C_05570) | - | 553086..553940 (+) | 855 | WP_003698614.1 | DUF2163 domain-containing protein | - |
| JLZ01_RS02955 (TUM19855C_05580) | - | 553942..554373 (+) | 432 | WP_003689064.1 | NlpC/P60 family protein | - |
| JLZ01_RS02960 (TUM19855C_05590) | - | 554401..554679 (-) | 279 | WP_003689062.1 | XRE family transcriptional regulator | - |
| JLZ01_RS02965 (TUM19855C_05600) | - | 554919..559064 (+) | 4146 | WP_172763934.1 | phage tail protein | - |
| JLZ01_RS02970 (TUM19855C_05610) | - | 559176..559481 (+) | 306 | WP_003689058.1 | hypothetical protein | - |
| JLZ01_RS02975 (TUM19855C_05620) | - | 559552..560022 (+) | 471 | WP_003691410.1 | hypothetical protein | - |
| JLZ01_RS02980 (TUM19855C_05630) | - | 560023..560355 (+) | 333 | WP_003691408.1 | hypothetical protein | - |
| JLZ01_RS02985 (TUM19855C_05640) | - | 560723..561070 (-) | 348 | WP_003689051.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| JLZ01_RS02990 (TUM19855C_05650) | - | 561070..561306 (-) | 237 | WP_003689049.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| JLZ01_RS11840 | - | 561346..561471 (+) | 126 | WP_255294325.1 | hypothetical protein | - |
| JLZ01_RS02995 (TUM19855C_05660) | - | 561513..562052 (+) | 540 | WP_050163081.1 | TIGR02594 family protein | - |
| JLZ01_RS03000 (TUM19855C_05670) | - | 562053..562397 (+) | 345 | WP_003695464.1 | hypothetical protein | - |
| JLZ01_RS03005 (TUM19855C_05680) | - | 562381..562554 (+) | 174 | WP_017146757.1 | hypothetical protein | - |
| JLZ01_RS03010 | - | 562866..563015 (+) | 150 | WP_003691402.1 | hypothetical protein | - |
| JLZ01_RS03015 (TUM19855C_05690) | - | 563045..566092 (+) | 3048 | WP_172763935.1 | tape measure protein | - |
| JLZ01_RS03020 (TUM19855C_05700) | - | 566152..566631 (-) | 480 | WP_002241413.1 | DUF4760 domain-containing protein | - |
| JLZ01_RS03025 | - | 566973..567962 (-) | 990 | WP_003689040.1 | site-specific integrase | - |
| JLZ01_RS03030 (TUM19855C_05720) | - | 568222..568410 (-) | 189 | WP_003689039.1 | hypothetical protein | - |
| JLZ01_RS03035 (TUM19855C_05730) | purM | 568651..569685 (+) | 1035 | WP_003691398.1 | phosphoribosylformylglycinamidine cyclo-ligase | - |
| JLZ01_RS03045 (TUM19855C_05750) | - | 570688..571341 (+) | 654 | WP_017147274.1 | IS1595 family transposase | - |
Sequence
Protein
Download Length: 313 a.a. Molecular weight: 34444.17 Da Isoelectric Point: 8.9718
>NTDB_id=83682 JLZ01_RS02685 WP_003690899.1 518283..519224(+) (pilJ) [Neisseria gonorrhoeae strain TUM 19855]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVFFGVTQKKPLFSLNLKRNSTNKLIPIAESPNIGYQGFTQRLNALIFQYGIDDANASAETTVVSSCGAI
SKPGKQIPTLEDAKKELKIQDSDKEQNGNIARQRHVVNAYAVGRFGNNEEGLFRFQLDDKGEWGNPQLLAKKVKRMDVRY
IYVSGCPEDEDAGKEEQFKYTGKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVFFGVTQKKPLFSLNLKRNSTNKLIPIAESPNIGYQGFTQRLNALIFQYGIDDANASAETTVVSSCGAI
SKPGKQIPTLEDAKKELKIQDSDKEQNGNIARQRHVVNAYAVGRFGNNEEGLFRFQLDDKGEWGNPQLLAKKVKRMDVRY
IYVSGCPEDEDAGKEEQFKYTGKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL
Nucleotide
Download Length: 942 bp
>NTDB_id=83682 JLZ01_RS02685 WP_003690899.1 518283..519224(+) (pilJ) [Neisseria gonorrhoeae strain TUM 19855]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTTTTTTCGGTGTGACGCAAAAAAAACCTCTTTTTTCCTTAAACTT
AAAAAGGAACAGTACAAATAAACTTATCCCCATAGCGGAATCTCCAAATATCGGATATCAGGGTTTTACCCAGCGCCTTA
ACGCATTGATTTTCCAATACGGAATCGATGATGCTAATGCAAGCGCCGAGACTACCGTCGTCAGCAGCTGTGGCGCAATA
TCGAAACCGGGTAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCAGGATTCTGATAAGGAGCAAAA
TGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCAATAATGAGGAAGGTTTGTTCC
GCTTCCAATTGGATGATAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAAACGTATGGATGTGCGGTAT
ATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGGTAAATTCGACAGCTC
TGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTT
ATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTTTTTTCGGTGTGACGCAAAAAAAACCTCTTTTTTCCTTAAACTT
AAAAAGGAACAGTACAAATAAACTTATCCCCATAGCGGAATCTCCAAATATCGGATATCAGGGTTTTACCCAGCGCCTTA
ACGCATTGATTTTCCAATACGGAATCGATGATGCTAATGCAAGCGCCGAGACTACCGTCGTCAGCAGCTGTGGCGCAATA
TCGAAACCGGGTAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCAGGATTCTGATAAGGAGCAAAA
TGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCAATAATGAGGAAGGTTTGTTCC
GCTTCCAATTGGATGATAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAAACGTATGGATGTGCGGTAT
ATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGGTAAATTCGACAGCTC
TGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTT
ATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
88.924 |
100 |
0.898 |