Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   JLZ01_RS02690 Genome accession   NZ_AP024155
Coordinates   519203..519811 (+) Length   202 a.a.
NCBI ID   WP_003690900.1    Uniprot ID   A0AB74EBN2
Organism   Neisseria gonorrhoeae strain TUM 19855     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514203..524811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLZ01_RS02665 (TUM19855C_04990) - 514522..515103 (-) 582 WP_003690895.1 superoxide dismutase -
  JLZ01_RS02670 (TUM19855C_05000) dnaB 515267..516673 (+) 1407 WP_003690896.1 replicative DNA helicase -
  JLZ01_RS02675 (TUM19855C_05010) pilH 516981..517646 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  JLZ01_RS02680 (TUM19855C_05020) pilI 517678..518286 (+) 609 WP_003690898.1 type IV pilus modification protein PilV Machinery gene
  JLZ01_RS02685 (TUM19855C_05030) pilJ 518283..519224 (+) 942 WP_003690899.1 PilW family protein Machinery gene
  JLZ01_RS02690 (TUM19855C_05040) pilK 519203..519811 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  JLZ01_RS02695 (TUM19855C_05050) pilL 519813..520286 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  JLZ01_RS02700 (TUM19855C_05060) - 520898..521343 (-) 446 Protein_520 AzlC family ABC transporter permease -
  JLZ01_RS02705 (TUM19855C_05070) dut 521509..521961 (+) 453 WP_003690909.1 dUTP diphosphatase -
  JLZ01_RS02710 (TUM19855C_05080) dapC 522039..523226 (+) 1188 WP_003690911.1 succinyldiaminopimelate transaminase -
  JLZ01_RS02715 (TUM19855C_05100) yaaA 523382..524161 (+) 780 WP_003690913.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22023.05 Da        Isoelectric Point: 7.5810

>NTDB_id=83683 JLZ01_RS02690 WP_003690900.1 519203..519811(+) (pilK) [Neisseria gonorrhoeae strain TUM 19855]
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRPCPAKSGKNSAGLCIDNKGMEYNKGVAGVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=83683 JLZ01_RS02690 WP_003690900.1 519203..519811(+) (pilK) [Neisseria gonorrhoeae strain TUM 19855]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTCCTTGCCCTGCAAAGTCTGGCA
AAAATTCTGCCGGTCTGTGCATTGACAATAAAGGGATGGAATATAATAAAGGCGTGGCAGGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

89.163

100

0.896

Multiple sequence alignment