Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QNK01_RS03665 Genome accession   NZ_CP126128
Coordinates   737101..737616 (+) Length   171 a.a.
NCBI ID   WP_092480422.1    Uniprot ID   -
Organism   Desemzia incerta strain EGm139     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 732101..742616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK01_RS03655 (QNK01_03655) gyrA 734030..736537 (+) 2508 WP_284030209.1 DNA gyrase subunit A -
  QNK01_RS03660 (QNK01_03660) rpsF 736759..737058 (+) 300 WP_092480423.1 30S ribosomal protein S6 -
  QNK01_RS03665 (QNK01_03665) ssb 737101..737616 (+) 516 WP_092480422.1 single-stranded DNA-binding protein Machinery gene
  QNK01_RS03670 (QNK01_03670) rpsR 737644..737880 (+) 237 WP_092480421.1 30S ribosomal protein S18 -
  QNK01_RS03675 (QNK01_03675) - 738150..740183 (+) 2034 WP_284029904.1 DHH family phosphoesterase -
  QNK01_RS03680 (QNK01_03680) rplI 740180..740632 (+) 453 WP_092480419.1 50S ribosomal protein L9 -
  QNK01_RS03685 (QNK01_03685) dnaB 740846..742231 (+) 1386 WP_092480418.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19037.79 Da        Isoelectric Point: 4.7726

>NTDB_id=836793 QNK01_RS03665 WP_092480422.1 737101..737616(+) (ssb) [Desemzia incerta strain EGm139]
MINNVVLVGRMTKDADLRYTSNGTAVASFTVAVNRQFTNQSGEREADFINCVAWRKTAETLANFTKKGSLVGVEGRIQTR
SYDNQQGQRVYVTEVVVDNFSMLEPKSVTDQRRVEDNGSAPSSKNFNSFNTNQNRSQSQQTPAKDYQNFGSSDPFESSGQ
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=836793 QNK01_RS03665 WP_092480422.1 737101..737616(+) (ssb) [Desemzia incerta strain EGm139]
GTGATTAATAATGTTGTGTTAGTTGGAAGAATGACTAAAGATGCAGATTTACGATATACGTCTAATGGAACAGCTGTTGC
TTCTTTTACAGTAGCTGTAAATAGACAATTCACTAATCAAAGTGGAGAACGTGAAGCAGACTTCATCAACTGTGTTGCTT
GGAGAAAAACTGCTGAAACGTTAGCAAATTTCACTAAAAAAGGATCATTAGTTGGTGTAGAGGGTCGTATTCAAACACGG
TCTTACGATAATCAACAAGGTCAAAGAGTTTATGTTACTGAAGTAGTAGTAGATAATTTTTCAATGCTTGAACCGAAATC
TGTTACAGATCAACGACGAGTAGAGGACAATGGATCAGCGCCTTCTTCTAAAAACTTTAATTCTTTTAATACTAATCAGA
ATAGATCACAATCCCAACAAACTCCTGCAAAAGACTATCAAAACTTTGGAAGCTCTGATCCTTTTGAATCAAGCGGACAA
CCTATTGATATCTCTGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.857

100

0.643
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.742

100

0.591
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.988

0.398
  ssb Glaesserella parasuis strain SC1401

32.804

100

0.363