Detailed information NTG0836772

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: OH686_RS16000
• Genome accession: NZ_CP126126
• Coordinates: 3428451..3429791 (-)
• Length: 446 a.a.
• NCBI ID: WP_289533879.1
• Uniprot ID: -
• Organism: Pseudomonas sp. SO81
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3423451..3434791

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH686_RS15985 (OH686_16375)	-	3423590..3426832 (+)	3243	WP_289533872.1	PilC/PilY family type IV pilus protein	-
OH686_RS15990 (OH686_16380)	-	3426844..3427248 (+)	405	WP_289533874.1	type IV pilin protein	-
OH686_RS15995 (OH686_16385)	thiO	3427312..3428412 (+)	1101	WP_289533877.1	glycine oxidase ThiO	-
OH686_RS16000 (OH686_16390)	pilR	3428451..3429791 (-)	1341	WP_289533879.1	sigma-54 dependent transcriptional regulator	Regulator
OH686_RS16005 (OH686_16395)	pilS	3429794..3431386 (-)	1593	WP_289533881.1	ATP-binding protein	Regulator
OH686_RS16010 (OH686_16400)	-	3431383..3431610 (-)	228	WP_289533883.1	PP0621 family protein	-
OH686_RS16015 (OH686_16405)	-	3431757..3432782 (-)	1026	WP_289533884.1	outer membrane protein assembly factor BamD	-
OH686_RS16020 (OH686_16410)	rluD	3432930..3433901 (+)	972	WP_289533885.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
OH686_RS16025 (OH686_16415)	pgeF	3433885..3434619 (+)	735	WP_289533887.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49685.98 Da
• Isoelectric Point: 5.5968

>NTDB_id=836772 OH686_RS16000 WP_289533879.1 3428451..3429791(-) (pilR) [Pseudomonas sp. SO81]
MSTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAKEWLAREPFDLCLTDMRLPDGTGLELVQHIQQRHAQVPVA
MITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVATALRLRSGEHEEGPVDTRLLGDSPPMKALRNQIQKLARSQAPV
YISGESGSGKELVARLIHEQGPRSEKPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAADGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLTAEVAAGRFRQDLFYRLNVIELRVPPLRERREDIPLLAET
MLHRLSEGSGLAAATITGDALDKLKCYRFPGNVRELENMLERAYTLCENDQIQAADLRLADAAPAAESGEASLSQIDNLE
DYLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide

• Length: 1341 bp

>NTDB_id=836772 OH686_RS16000 WP_289533879.1 3428451..3429791(-) (pilR) [Pseudomonas sp. SO81]
ATGAGCACCCGGCAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAACTCCTGGAAATCACCCTGGGCCGTAT
GAAGCTCGACACGCGCAGCGCACGCAACGTCAAAGAGGCGAAGGAGTGGCTAGCTCGCGAGCCATTCGATCTGTGCCTGA
CCGATATGCGCCTGCCCGACGGCACCGGACTGGAGCTGGTGCAGCATATCCAGCAGCGCCACGCGCAAGTTCCGGTGGCG
ATGATCACCGCCTATGGCAGCCTGGATACTGCAATCAACGCGCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAACCCGT
CGATCTCGGCCGCCTGCGTGAACTGGTGGCCACCGCGCTGCGCCTGCGTAGCGGTGAACACGAAGAGGGCCCGGTCGACA
CCCGTCTGCTCGGCGACTCGCCGCCGATGAAGGCCTTGCGTAACCAGATCCAGAAACTCGCGCGCAGTCAGGCTCCTGTC
TATATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCCCGCCTGATCCATGAGCAAGGGCCGCGCAGCGAAAAGCC
CTTCGTACCAGTCAACTGCGGAGCCATCCCCTCGGAGCTGATGGAGAGTGAGTTCTTCGGTCACAAGAAGGGCAGCTTTA
CCGGAGCCATCGAGGATAAACAGGGACTCTTCCAGGCCGCCGACGGCGGCACGCTGTTCCTCGACGAAGTCGCTGACCTG
CCACTGGCCATGCAGGTCAAGCTGCTGCGCGCAATCCAGGAAAAGGCCGTGCGCGCCGTCGGCGGACAGCAGGAAGTAGT
GGTAGATGTACGCATCCTCTGCGCCACTCACAAGGATCTGACGGCAGAGGTCGCTGCCGGACGCTTCCGCCAGGACTTGT
TCTACCGACTTAACGTTATCGAGCTGCGCGTGCCCCCACTGCGCGAGCGCCGCGAAGATATTCCGCTGCTGGCTGAAACC
ATGCTGCACCGGCTATCCGAAGGCAGCGGCCTAGCAGCCGCGACCATCACCGGGGACGCTCTGGACAAGCTCAAGTGCTA
CCGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATGCTGGAGCGTGCCTACACCCTGTGCGAGAACGATCAAATACAGG
CAGCCGACCTGCGCCTGGCCGACGCCGCTCCAGCCGCGGAGAGCGGCGAAGCCTCGCTATCGCAGATAGACAATCTTGAG
GACTACTTGGAAGAGATCGAGCGCAAGCTGATCATGCAAGCCCTCGAAGAAACTCGTTGGAACCGCACCGCCGCTGCCCA
GCGCCTGGGCCTGACCTTCCGCTCCATGCGCTATCGCCTGAAGAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	88.739	99.552	0.883
pilR	Acinetobacter baumannii strain A118	50.109	100	0.516
luxO	Vibrio cholerae strain A1552	37.5	100	0.377