Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   U7118_RS17030 Genome accession   NZ_CP141283
Coordinates   3134431..3137322 (-) Length   963 a.a.
NCBI ID   WP_031600330.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3129431..3142322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS16995 (U7118_16995) - 3129873..3130055 (+) 183 WP_024571667.1 hypothetical protein -
  U7118_RS17000 (U7118_17000) yhzE2 3130108..3130194 (-) 87 WP_003155248.1 sporulation protein YhzE2 -
  U7118_RS17005 (U7118_17005) yhzE1 3130319..3130405 (-) 87 WP_003327753.1 sporulation protein YhzE1 -
  U7118_RS17010 (U7118_17010) prsA 3130565..3131449 (+) 885 WP_014479335.1 peptidylprolyl isomerase -
  U7118_RS17015 (U7118_17015) - 3131586..3132938 (+) 1353 WP_014478984.1 IS1182 family transposase -
  U7118_RS17020 (U7118_17020) yhaL 3133076..3133288 (-) 213 WP_003233252.1 sporulation protein YhaL -
  U7118_RS17025 (U7118_17025) yhaM 3133413..3134357 (-) 945 WP_003245698.1 3'-5' exoribonuclease YhaM -
  U7118_RS17030 (U7118_17030) sbcE 3134431..3137322 (-) 2892 WP_031600330.1 DNA repair/recombination ATPase SbcE Machinery gene
  U7118_RS17035 (U7118_17035) yhaO 3137327..3138553 (-) 1227 WP_014479332.1 metallophosphoesterase family protein -
  U7118_RS17040 (U7118_17040) yhaP 3138660..3139919 (-) 1260 WP_003244912.1 ABC transporter permease -
  U7118_RS17045 (U7118_17045) yhaQ 3139912..3140808 (-) 897 WP_064911661.1 ABC transporter ATP-binding protein -
  U7118_RS17050 (U7118_17050) yhzD 3140935..3141120 (+) 186 WP_069964086.1 YhzD family protein -
  U7118_RS17055 (U7118_17055) yhaR 3141141..3141908 (-) 768 WP_015715595.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 963 a.a.        Molecular weight: 111052.16 Da        Isoelectric Point: 6.3301

>NTDB_id=836772 U7118_RS17030 WP_031600330.1 3134431..3137322(-) (sbcE) [Bacillus subtilis strain DKU_09]
MTALRIISLHIYQYGKFSNRTFHFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYG
VLKIERTKGTAEKLSVYTEKGEVKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
LDSRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEAEEAGYHQLLGEKRMLEARLAAAETELKETAGHIRMIEGA
IERKPLLNEKATLEQVIAEFPEHAGQFPADGLHQLEKYESHLHPKSAQLEALRVKMAELDKQRQKLIPDKELLAKETLIQ
ELSAAFHMYQSCGEQLAAIQAQLRQASAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARQELEDTEKAVRAASSAILEDSQRKDKEAALRAYDETQGQHQEQAKLREQLTFFERQQAKQKKTVIAVGMLFIVLFSL
LQQWIPAISFGAALIVYWLVSGKSSSRNSRETRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQ
QFEQWEAEMAPSFTQVERFMNELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRRTFEERVSMLLPVNQSQ
DISISDALHTLRKNIEREKEIEKQKKEIETDIHYTKEQMLELEQEIQYFHAQIEQLFAAAAAKDRDAFFAIADISRQLKD
TENKLHHVNAQLQGGYPEELELADSNTLSELKDKQFVENERKERLTEEIERLRSQIALLSVKQEQLEASGLVSDLKLQTE
MQKDRVKETAKKWASIQMVKQVIRNKLERHKKIELPRLLETAGEFFRPLTDGNYQTIYFSETDDSIMVMHRDGTVYHAEE
LSQGTCEQLYTAIRFALAVTRQGGSKLPFQLDDSFVHFDQERLKRVLHVLYNLSEGGRQILYFTCHEHVKDAFHSSQIIH
LVS

Nucleotide


Download         Length: 2892 bp        

>NTDB_id=836772 U7118_RS17030 WP_031600330.1 3134431..3137322(-) (sbcE) [Bacillus subtilis strain DKU_09]
GTGACAGCTTTGCGAATTATATCTTTACATATCTACCAATACGGAAAATTTTCCAATCGGACCTTTCACTTTTCCGCCTC
TCCTGTCCAAGTCATCTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTCATTGAAAGCATGCTGTTCGGTT
TTCCGAAAACGAAAAAATATGAACCGAAAACAGGCGGTGTCTACGGCGGTGTTCTTGAAGCTGAACATCCTGAGTATGGG
GTGCTGAAGATCGAACGGACGAAAGGGACTGCCGAAAAACTAAGCGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTTTAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTCGACGTATTCGGGCTGCAGG
AAATTCACGCCTTTAATCGGGACAAGATAGGGGAATTTTTGCTCTTTTCCAGCTTGTTTGGTGCTGAAGCCGTATCGAAG
CTTGATTCAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAACCAGGAGCTGGA
AACGCTTAAGCAGCTGGCAGTGAAGCTAAAACAGGCTGAAGCAGAGGAAGCGGGCTATCATCAGCTTCTCGGGGAAAAAC
GAATGCTTGAAGCCCGCCTTGCAGCCGCGGAAACCGAATTGAAAGAGACGGCGGGACATATCCGAATGATTGAGGGAGCG
ATTGAGCGAAAACCATTGCTAAATGAAAAAGCGACACTCGAACAGGTGATTGCAGAATTTCCGGAACATGCAGGACAATT
TCCTGCTGACGGACTGCATCAGCTGGAAAAATATGAATCCCATCTTCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TGAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCGATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAGCTTTCGGCAGCGTTTCATATGTACCAATCCTGTGGAGAACAGCTGGCAGCCATTCAGGCACAGCTGCGCCAGGCGTC
TGCGCAGACAGCGGCAGGGCTGGAACAGCTCAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACATTTGAA
CTTGCCCGGCAAGAGCTGGAAGACACGGAAAAGGCCGTTCGTGCCGCTTCGTCCGCGATTCTTGAAGATAGCCAAAGAAA
AGATAAAGAAGCTGCTCTTAGAGCATATGATGAAACACAGGGGCAGCACCAAGAGCAAGCGAAGCTCAGAGAACAGCTAA
CGTTTTTTGAAAGACAGCAGGCTAAACAGAAAAAGACTGTCATTGCAGTTGGTATGTTGTTCATCGTTCTCTTTTCTCTG
CTGCAGCAATGGATTCCCGCCATAAGTTTCGGTGCTGCACTTATTGTGTATTGGCTTGTATCAGGAAAATCGTCTTCTCG
AAACAGCCGAGAGACAAGACAGCCCATGACGGATATTTCTCCAGCAGAAGCTGAAATGCTTAGAGAAGCGTTATGGGAGG
ATGACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAGGAGGCGGCGTATGAAAGGGTCATCCAG
CAGTTTGAACAGTGGGAAGCCGAAATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAATGAGCTCGGATTTAAGGA
AGATCCATCATTTTTGCTTGATGCATACAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACCA
TTGAAGCAGGCAGGCTGAAAAAGCACCGGAGAACATTCGAAGAACGCGTCAGTATGCTTCTTCCCGTGAATCAGAGTCAG
GATATCTCCATTTCGGACGCCCTTCACACATTGCGGAAAAACATTGAACGTGAAAAAGAAATTGAGAAGCAAAAAAAGGA
AATTGAAACAGATATTCATTATACAAAGGAACAGATGCTTGAACTTGAGCAAGAAATACAGTATTTCCACGCACAGATTG
AACAGTTATTTGCCGCGGCTGCTGCAAAAGACAGAGATGCGTTTTTTGCCATAGCCGACATCAGCAGGCAATTGAAGGAT
ACGGAGAACAAGCTTCATCACGTAAACGCACAGCTTCAAGGCGGGTACCCGGAGGAACTTGAACTGGCGGATTCCAATAC
GCTTTCTGAATTGAAAGATAAGCAATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCGGCTCCGCA
GCCAAATCGCACTGCTCTCAGTCAAACAGGAACAATTAGAGGCTTCGGGATTGGTCTCAGACCTCAAGCTTCAAACCGAA
ATGCAAAAAGATCGTGTAAAAGAAACGGCTAAAAAATGGGCCTCGATACAAATGGTCAAACAGGTGATCAGAAACAAATT
GGAGCGGCATAAAAAAATCGAGCTTCCGCGCCTTCTAGAGACGGCAGGAGAATTCTTCCGCCCTCTGACTGACGGAAACT
ACCAAACCATTTATTTTTCCGAAACGGATGATTCGATCATGGTTATGCATCGCGATGGAACTGTCTATCATGCGGAAGAG
CTGTCACAAGGGACGTGTGAACAGCTGTATACAGCGATCCGATTTGCTTTGGCCGTTACGCGCCAGGGTGGGTCAAAGCT
TCCGTTCCAGCTTGACGACAGTTTTGTTCATTTTGATCAGGAAAGGCTGAAACGTGTATTACATGTTCTGTATAATTTAT
CTGAAGGCGGTAGGCAGATTTTGTATTTTACATGCCATGAGCACGTAAAAGATGCATTTCATAGCAGCCAAATCATCCAT
TTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

98.546

100

0.985