Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OH686_RS16005 Genome accession   NZ_CP126126
Coordinates   3429794..3431386 (-) Length   530 a.a.
NCBI ID   WP_289533881.1    Uniprot ID   -
Organism   Pseudomonas sp. SO81     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3424794..3436386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH686_RS15990 (OH686_16380) - 3426844..3427248 (+) 405 WP_289533874.1 type IV pilin protein -
  OH686_RS15995 (OH686_16385) thiO 3427312..3428412 (+) 1101 WP_289533877.1 glycine oxidase ThiO -
  OH686_RS16000 (OH686_16390) pilR 3428451..3429791 (-) 1341 WP_289533879.1 sigma-54 dependent transcriptional regulator Regulator
  OH686_RS16005 (OH686_16395) pilS 3429794..3431386 (-) 1593 WP_289533881.1 ATP-binding protein Regulator
  OH686_RS16010 (OH686_16400) - 3431383..3431610 (-) 228 WP_289533883.1 PP0621 family protein -
  OH686_RS16015 (OH686_16405) - 3431757..3432782 (-) 1026 WP_289533884.1 outer membrane protein assembly factor BamD -
  OH686_RS16020 (OH686_16410) rluD 3432930..3433901 (+) 972 WP_289533885.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OH686_RS16025 (OH686_16415) pgeF 3433885..3434619 (+) 735 WP_289533887.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58939.15 Da        Isoelectric Point: 7.8723

>NTDB_id=836773 OH686_RS16005 WP_289533881.1 3429794..3431386(-) (pilS) [Pseudomonas sp. SO81]
MSAEHLTLDGIPGRRILRLYNLYRVALGLALVLLISSNLDSELLELAHVQLFRYGSWTYLIVNVLITVLMQRPKHLIQVF
GLALLDVLLLCALFYSAGGTPSGIGNLLIVAVAIANILLRGRVGLLIAAVAAIGMLALTFYLSLHRPAAGSQFVQAGALG
ALCFAAAIFLQGLSQRLQQSENLAEQRAVDVASLEALNSLILQRMRTGILVLDKQHKVLLANQGALGMLGRSRLENKVLD
PHCPDLVQRLQQWQHNPTLRPQSLQAIADGPLLQPSFIPLHRGDELHTLIFLDDISQVTQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLEEPDRRLAQIIQDHSRRMNMVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRNSARLD
QTLHLETSSGSLQTRMDPHQLTQVLTNLVQNGLRYSAQSHQLGQVWLKLYRDAESDLPTLEVLDDGPGVPAEQLQHIFEP
FYTTDNKGTGLGLYISRELCESNQARLDYKPRDGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=836773 OH686_RS16005 WP_289533881.1 3429794..3431386(-) (pilS) [Pseudomonas sp. SO81]
GTGAGCGCAGAGCACCTGACTCTCGACGGCATCCCCGGCCGCCGGATACTGCGACTGTACAACCTGTACCGGGTCGCCCT
CGGCCTGGCGCTGGTCCTGCTGATTTCCAGCAATCTGGACAGCGAGCTGCTGGAGCTGGCGCATGTGCAGCTGTTCCGCT
ACGGCAGCTGGACGTACCTGATAGTCAACGTCCTGATAACGGTGCTGATGCAGCGCCCCAAGCACCTGATTCAGGTGTTT
GGTCTGGCACTGCTAGACGTACTTCTGCTCTGCGCGCTCTTCTACTCGGCAGGAGGCACTCCCAGCGGCATCGGCAACTT
GCTGATCGTCGCGGTGGCGATTGCCAATATCCTGCTACGCGGGCGAGTCGGCCTGCTGATCGCTGCCGTGGCCGCTATCG
GCATGCTCGCCCTGACCTTCTATCTGAGCCTGCATCGCCCCGCAGCCGGCAGCCAGTTCGTCCAGGCTGGCGCGCTCGGT
GCGCTCTGTTTTGCTGCAGCGATTTTTCTCCAAGGCCTCAGTCAGCGCCTGCAACAGAGCGAAAACCTGGCCGAACAACG
GGCGGTCGATGTCGCCAGCCTTGAAGCACTCAACTCGCTGATTCTGCAACGCATGCGCACCGGTATCCTGGTGCTGGACA
AGCAGCACAAGGTGTTGCTGGCCAATCAGGGCGCCCTCGGCATGCTTGGCCGCAGCAGGCTGGAAAACAAGGTACTGGAC
CCGCATTGCCCGGATCTGGTCCAGCGCCTGCAACAGTGGCAGCACAATCCGACCCTTCGCCCACAGAGCCTGCAGGCGAT
AGCCGATGGACCTCTGCTGCAGCCCAGCTTTATCCCCCTACACAGGGGCGATGAGCTGCACACATTGATCTTCCTCGACG
ATATCTCGCAGGTTACTCAGCAAGCCCAGCAACTGAAGCTAGCCTCGCTCGGCCGACTGACTGCCGGCATCGCCCATGAG
ATCCGCAACCCGCTGGGCGCCATCAGCCACGCCGCGCAGCTGCTGCAGGAGTCTGAAGACCTGGAGGAGCCTGACCGGCG
CCTGGCCCAGATCATCCAGGATCATTCGCGACGGATGAACATGGTGATCGAGAACGTATTGCAGCTCTCGCGCCGCCGCC
AGGCGGAGCCGCAACTGCTCGACCTGAAATACTGGCTACATCGCTTCGCCAGTGAGTTCCGCAACTCCGCGCGCCTGGAT
CAGACCCTGCATCTGGAAACCAGCAGTGGCAGCCTGCAGACCCGAATGGACCCCCACCAGCTGACCCAGGTGCTGACCAA
CCTGGTGCAGAACGGCCTGCGCTATAGCGCCCAAAGCCATCAATTGGGCCAGGTGTGGCTTAAGCTCTATCGCGACGCCG
AGAGCGATCTGCCTACGCTGGAGGTGCTGGACGACGGGCCTGGCGTGCCAGCCGAGCAGTTGCAGCACATCTTCGAGCCC
TTCTATACCACCGATAACAAGGGCACCGGCCTGGGCCTGTATATTTCCCGCGAGCTATGCGAAAGCAACCAGGCACGCCT
CGACTACAAACCTCGCGACGGTGGTGGCAGCTGTTTCCGCATCACCTTCGCCCATCCACGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.472

100

0.655