Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QNH23_RS16160 | Genome accession | NZ_CP126113 |
| Coordinates | 3198652..3199152 (+) | Length | 166 a.a. |
| NCBI ID | WP_120073539.1 | Uniprot ID | A0A443IQM1 |
| Organism | Siminovitchia fortis strain XLM16 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3193652..3204152
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QNH23_RS16140 (QNH23_16140) | - | 3194873..3196012 (+) | 1140 | WP_120073530.1 | thiolase family protein | - |
| QNH23_RS16145 (QNH23_16145) | - | 3196037..3197590 (+) | 1554 | WP_120073532.1 | fatty acid--CoA ligase | - |
| QNH23_RS16150 (QNH23_16150) | - | 3197703..3198047 (+) | 345 | WP_120073534.1 | DUF378 domain-containing protein | - |
| QNH23_RS16155 (QNH23_16155) | rpsF | 3198299..3198589 (+) | 291 | WP_120073536.1 | 30S ribosomal protein S6 | - |
| QNH23_RS16160 (QNH23_16160) | ssbA | 3198652..3199152 (+) | 501 | WP_120073539.1 | single-stranded DNA-binding protein | Machinery gene |
| QNH23_RS16165 (QNH23_16165) | rpsR | 3199177..3199413 (+) | 237 | WP_120073541.1 | 30S ribosomal protein S18 | - |
| QNH23_RS16170 (QNH23_16170) | - | 3199746..3200684 (+) | 939 | WP_120073543.1 | YybS family protein | - |
| QNH23_RS16175 (QNH23_16175) | - | 3200725..3202698 (+) | 1974 | WP_120073545.1 | DHH family phosphoesterase | - |
| QNH23_RS16180 (QNH23_16180) | rplI | 3202695..3203144 (+) | 450 | WP_120073548.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18458.08 Da Isoelectric Point: 4.4643
>NTDB_id=836560 QNH23_RS16160 WP_120073539.1 3198652..3199152(+) (ssbA) [Siminovitchia fortis strain XLM16]
MMNRVVLVGRLTKDPDLRYTPNGVPVANFTLAVNRTFTNQQGEREADFIFCVAWRRQAENIANYLKKGSLAGVDGRLQTR
SYDDQDGKRVYITEVVADNVQFLEPRSAASQDRGGDFGGSSFDGSGQRSQGSSYGDQRNQGYTRTDEDPFSNDGQPIDIS
DDDLPF
MMNRVVLVGRLTKDPDLRYTPNGVPVANFTLAVNRTFTNQQGEREADFIFCVAWRRQAENIANYLKKGSLAGVDGRLQTR
SYDDQDGKRVYITEVVADNVQFLEPRSAASQDRGGDFGGSSFDGSGQRSQGSSYGDQRNQGYTRTDEDPFSNDGQPIDIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=836560 QNH23_RS16160 WP_120073539.1 3198652..3199152(+) (ssbA) [Siminovitchia fortis strain XLM16]
ATGATGAACCGAGTAGTATTAGTTGGCCGATTAACTAAAGATCCGGATTTGCGCTATACGCCGAACGGAGTGCCGGTTGC
GAACTTCACATTAGCTGTTAACCGTACGTTTACCAACCAGCAGGGGGAACGTGAAGCAGACTTTATCTTTTGTGTTGCTT
GGCGCCGCCAGGCAGAAAATATTGCCAACTACTTGAAAAAGGGAAGCTTGGCAGGGGTGGACGGCCGTTTGCAGACACGC
AGCTATGATGATCAGGATGGAAAACGGGTATATATCACTGAAGTGGTTGCAGACAATGTTCAATTTCTGGAACCAAGAAG
TGCTGCATCACAAGATCGCGGCGGCGACTTTGGCGGAAGCTCATTCGATGGCAGCGGCCAGCGAAGCCAAGGCTCCTCCT
ACGGCGATCAAAGGAACCAGGGCTATACTCGGACAGATGAAGACCCATTCTCAAATGATGGACAACCGATCGACATATCG
GATGACGATCTTCCATTTTAA
ATGATGAACCGAGTAGTATTAGTTGGCCGATTAACTAAAGATCCGGATTTGCGCTATACGCCGAACGGAGTGCCGGTTGC
GAACTTCACATTAGCTGTTAACCGTACGTTTACCAACCAGCAGGGGGAACGTGAAGCAGACTTTATCTTTTGTGTTGCTT
GGCGCCGCCAGGCAGAAAATATTGCCAACTACTTGAAAAAGGGAAGCTTGGCAGGGGTGGACGGCCGTTTGCAGACACGC
AGCTATGATGATCAGGATGGAAAACGGGTATATATCACTGAAGTGGTTGCAGACAATGTTCAATTTCTGGAACCAAGAAG
TGCTGCATCACAAGATCGCGGCGGCGACTTTGGCGGAAGCTCATTCGATGGCAGCGGCCAGCGAAGCCAAGGCTCCTCCT
ACGGCGATCAAAGGAACCAGGGCTATACTCGGACAGATGAAGACCCATTCTCAAATGATGGACAACCGATCGACATATCG
GATGACGATCTTCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.318 |
100 |
0.681 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.31 |
100 |
0.59 |
| ssb | Glaesserella parasuis strain SC1401 |
35.484 |
100 |
0.398 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
61.321 |
63.855 |
0.392 |