Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH37_RS27780 Genome accession   NZ_CP126112
Coordinates   5770291..5770815 (-) Length   174 a.a.
NCBI ID   WP_283899936.1    Uniprot ID   -
Organism   Peribacillus simplex strain WH6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5765291..5775815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH37_RS27760 (QNH37_27760) rplI 5766363..5766812 (-) 450 WP_192207364.1 50S ribosomal protein L9 -
  QNH37_RS27765 (QNH37_27765) - 5766809..5768779 (-) 1971 WP_283899931.1 DHH family phosphoesterase -
  QNH37_RS27770 (QNH37_27770) - 5768821..5769768 (-) 948 WP_283899933.1 YybS family protein -
  QNH37_RS27775 (QNH37_27775) rpsR 5770004..5770243 (-) 240 WP_034316147.1 30S ribosomal protein S18 -
  QNH37_RS27780 (QNH37_27780) ssbA 5770291..5770815 (-) 525 WP_283899936.1 single-stranded DNA-binding protein Machinery gene
  QNH37_RS27785 (QNH37_27785) rpsF 5770885..5771169 (-) 285 WP_034316153.1 30S ribosomal protein S6 -
  QNH37_RS27790 (QNH37_27790) ychF 5771366..5772466 (-) 1101 WP_076368500.1 redox-regulated ATPase YchF -
  QNH37_RS27795 (QNH37_27795) - 5772635..5772832 (-) 198 WP_251427315.1 DUF951 domain-containing protein -
  QNH37_RS27800 (QNH37_27800) - 5772853..5773689 (-) 837 WP_283899941.1 mechanosensitive ion channel family protein -
  QNH37_RS27805 (QNH37_27805) yyaC 5774081..5774716 (+) 636 WP_283899943.1 spore protease YyaC -
  QNH37_RS27810 (QNH37_27810) - 5774771..5775472 (-) 702 WP_076368504.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19304.00 Da        Isoelectric Point: 4.8195

>NTDB_id=836519 QNH37_RS27780 WP_283899936.1 5770291..5770815(-) (ssbA) [Peribacillus simplex strain WH6]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRSFTNQQGDREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYAGGQRSYGNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPFAN
DGKTIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=836519 QNH37_RS27780 WP_283899936.1 5770291..5770815(-) (ssbA) [Peribacillus simplex strain WH6]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCCGTAGC
TACCTTTACTTTAGCTGTGAACCGTAGTTTTACGAATCAGCAGGGTGATCGTGAAGCGGATTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAGGGCAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGTGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGCTGGGGGTCAAAGAAGTTATGGCAATAACGGAAATGACAACA
ATTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAATAACAACTACACTCGTGTAGATGATGATCCGTTTGCAAAT
GACGGTAAGACAATCGACATTTCAGATGACGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.362

100

0.695
  ssb Latilactobacillus sakei subsp. sakei 23K

57.062

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

60.92

0.374
  ssb Glaesserella parasuis strain SC1401

35.359

100

0.368