Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH20_RS26830 Genome accession   NZ_CP126110
Coordinates   5570418..5570945 (-) Length   175 a.a.
NCBI ID   WP_283920945.1    Uniprot ID   A0AA95SAY5
Organism   Neobacillus sp. WH10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5565418..5575945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH20_RS26810 (QNH20_26810) rplI 5566626..5567075 (-) 450 WP_283920942.1 50S ribosomal protein L9 -
  QNH20_RS26815 (QNH20_26815) - 5567072..5569045 (-) 1974 WP_283920943.1 DHH family phosphoesterase -
  QNH20_RS26820 (QNH20_26820) - 5569071..5570009 (-) 939 WP_283920944.1 YybS family protein -
  QNH20_RS26825 (QNH20_26825) rpsR 5570130..5570369 (-) 240 WP_007088219.1 30S ribosomal protein S18 -
  QNH20_RS26830 (QNH20_26830) ssbA 5570418..5570945 (-) 528 WP_283920945.1 single-stranded DNA-binding protein Machinery gene
  QNH20_RS26835 (QNH20_26835) rpsF 5571017..5571304 (-) 288 WP_283920946.1 30S ribosomal protein S6 -
  QNH20_RS26840 (QNH20_26840) ychF 5571489..5572589 (-) 1101 WP_283920947.1 redox-regulated ATPase YchF -
  QNH20_RS26845 (QNH20_26845) - 5572718..5574715 (-) 1998 WP_283920948.1 molybdopterin-dependent oxidoreductase -
  QNH20_RS26850 (QNH20_26850) - 5574800..5574997 (-) 198 WP_283920949.1 DUF951 domain-containing protein -
  QNH20_RS26855 (QNH20_26855) - 5575016..5575888 (-) 873 WP_283920950.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19408.31 Da        Isoelectric Point: 4.9815

>NTDB_id=836467 QNH20_RS26830 WP_283920945.1 5570418..5570945(-) (ssbA) [Neobacillus sp. WH10]
MMNRVVLVGRLTKDPDLRYTPNGVPVATFTLAVNRPFSNQTGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQTR
NYEGQDGKRVYVTEVQAESVQFLEPKSSSGGGGRSNDYYGAPPMEPQGNPYGSSNQNQRQNQNQNQNQNKGFTRMDEDPF
AGNGQIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=836467 QNH20_RS26830 WP_283920945.1 5570418..5570945(-) (ssbA) [Neobacillus sp. WH10]
ATGATGAATCGTGTCGTGCTTGTTGGCCGTTTAACAAAAGATCCTGATTTGCGTTATACACCAAATGGGGTTCCTGTTGC
TACGTTTACGTTAGCTGTTAACCGTCCATTTTCTAATCAGACAGGTGAACGAGAAGCAGACTTTATTAACTGTGTTGTTT
GGCGTAAACCTGCTGAAAATGTGGCGAACTTTTTAAAGAAAGGCAGCCTAGCAGGTGTTGATGGCCGGATCCAAACCCGC
AACTATGAAGGACAAGATGGTAAACGTGTGTACGTTACAGAGGTTCAAGCAGAAAGTGTTCAATTTCTAGAACCTAAGTC
GTCTTCTGGCGGTGGCGGAAGAAGCAACGATTATTACGGTGCTCCTCCAATGGAACCACAAGGTAATCCATATGGCAGCA
GCAATCAGAATCAACGACAAAATCAAAATCAAAATCAAAATCAAAATAAAGGTTTTACGCGAATGGATGAAGATCCATTT
GCCGGAAATGGTCAAATTGACATCTCTGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.088

100

0.663
  ssb Latilactobacillus sakei subsp. sakei 23K

53.723

100

0.577
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

60.571

0.389
  ssb Glaesserella parasuis strain SC1401

35.714

100

0.371