Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH42_RS25395 Genome accession   NZ_CP126108
Coordinates   5066021..5066533 (-) Length   170 a.a.
NCBI ID   WP_048010214.1    Uniprot ID   A0AA46P374
Organism   Cytobacillus firmus strain SQ11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5061021..5071533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH42_RS25375 (QNH42_25375) rplI 5062137..5062583 (-) 447 WP_035328283.1 50S ribosomal protein L9 -
  QNH42_RS25380 (QNH42_25380) - 5062580..5064553 (-) 1974 WP_048010216.1 DHH family phosphoesterase -
  QNH42_RS25385 (QNH42_25385) - 5064585..5065520 (-) 936 WP_226618923.1 YybS family protein -
  QNH42_RS25390 (QNH42_25390) rpsR 5065723..5065962 (-) 240 WP_009332461.1 30S ribosomal protein S18 -
  QNH42_RS25395 (QNH42_25395) ssbA 5066021..5066533 (-) 513 WP_048010214.1 single-stranded DNA-binding protein Machinery gene
  QNH42_RS25400 (QNH42_25400) rpsF 5066569..5066856 (-) 288 WP_048010213.1 30S ribosomal protein S6 -
  QNH42_RS25405 (QNH42_25405) - 5067023..5067292 (-) 270 WP_250801492.1 hypothetical protein -
  QNH42_RS25410 (QNH42_25410) ychF 5067329..5068429 (-) 1101 WP_163140312.1 redox-regulated ATPase YchF -
  QNH42_RS25415 (QNH42_25415) - 5068593..5070587 (-) 1995 WP_250801493.1 molybdopterin-dependent oxidoreductase -
  QNH42_RS25420 (QNH42_25420) - 5070615..5070812 (-) 198 WP_035328295.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18860.59 Da        Isoelectric Point: 4.7827

>NTDB_id=836373 QNH42_RS25395 WP_048010214.1 5066021..5066533(-) (ssbA) [Cytobacillus firmus strain SQ11]
MMNRVVLVGRLTKDPDLRYTPNGVPVASFTLAVNRAFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQSR
SYEGQDGKRVYVTEVQAESVQFLEPKNSSGGQGGGNPNYGGPRDQDFPFGNNSNQNQRQDNRNQGNYTRVDQDPFANDGQ
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=836373 QNH42_RS25395 WP_048010214.1 5066021..5066533(-) (ssbA) [Cytobacillus firmus strain SQ11]
ATGATGAACCGTGTTGTTCTTGTCGGACGTTTGACAAAGGATCCTGATTTGCGGTATACCCCGAACGGAGTTCCTGTCGC
TTCATTCACTCTTGCCGTGAATCGTGCTTTTACGAATCAGCAAGGTGAGCGGGAGGCAGACTTTATCAACTGTGTGGTAT
GGAGAAAGCCAGCTGAAAACGTAGCGAATTTCCTTAAAAAAGGAAGTCTTGCAGGTGTAGATGGCCGGATTCAATCCCGC
AGCTATGAAGGCCAGGATGGAAAGCGCGTTTACGTGACAGAAGTCCAGGCTGAGAGTGTGCAATTCCTTGAGCCGAAGAA
TAGTTCTGGCGGCCAGGGCGGCGGTAATCCGAACTACGGTGGTCCAAGAGATCAGGATTTCCCATTTGGAAATAACAGCA
ATCAGAATCAACGACAGGATAATCGTAATCAGGGCAACTACACTCGCGTGGATCAGGACCCATTCGCAAATGACGGCCAA
ATCGACATTTCCGATGACGACCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.787

100

0.741
  ssb Latilactobacillus sakei subsp. sakei 23K

55.114

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.353

0.4
  ssb Glaesserella parasuis strain SC1401

35.393

100

0.371