Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH43_RS27515 Genome accession   NZ_CP126106
Coordinates   5767931..5768458 (-) Length   175 a.a.
NCBI ID   WP_076368498.1    Uniprot ID   -
Organism   Peribacillus simplex strain RZ14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5762931..5773458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH43_RS27495 (QNH43_27495) rplI 5764002..5764451 (-) 450 WP_076368495.1 50S ribosomal protein L9 -
  QNH43_RS27500 (QNH43_27500) - 5764448..5766418 (-) 1971 WP_283916444.1 DHH family phosphoesterase -
  QNH43_RS27505 (QNH43_27505) - 5766461..5767408 (-) 948 WP_283916445.1 YybS family protein -
  QNH43_RS27510 (QNH43_27510) rpsR 5767644..5767883 (-) 240 WP_034316147.1 30S ribosomal protein S18 -
  QNH43_RS27515 (QNH43_27515) ssbA 5767931..5768458 (-) 528 WP_076368498.1 single-stranded DNA-binding protein Machinery gene
  QNH43_RS27520 (QNH43_27520) rpsF 5768528..5768812 (-) 285 WP_076368499.1 30S ribosomal protein S6 -
  QNH43_RS27525 (QNH43_27525) ychF 5769144..5770244 (-) 1101 WP_076368500.1 redox-regulated ATPase YchF -
  QNH43_RS27530 (QNH43_27530) - 5770411..5770608 (-) 198 WP_283916446.1 DUF951 domain-containing protein -
  QNH43_RS27535 (QNH43_27535) - 5770629..5771465 (-) 837 WP_283916447.1 mechanosensitive ion channel family protein -
  QNH43_RS27540 (QNH43_27540) yyaC 5771856..5772491 (+) 636 WP_076368503.1 spore protease YyaC -
  QNH43_RS27545 (QNH43_27545) - 5772547..5773248 (-) 702 WP_076368504.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19388.07 Da        Isoelectric Point: 4.8282

>NTDB_id=836269 QNH43_RS27515 WP_076368498.1 5767931..5768458(-) (ssbA) [Peribacillus simplex strain RZ14]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRGFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQRSYGNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPFA
NDGKTIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=836269 QNH43_RS27515 WP_076368498.1 5767931..5768458(-) (ssbA) [Peribacillus simplex strain RZ14]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCCGTAGC
TACCTTTACTTTAGCTGTGAACCGTGGTTTTACGAATCAGCAGGGTGAACGTGAAGCGGATTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAGGGTAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGAGGTCAAAGAAGTTATGGCAATAATAACGGAAATGACA
ACAATTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAATAACAACTACACTCGTGTAGATGATGATCCGTTTGCA
AATGACGGTAAGACAATCGACATTTCAGATGACGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.101

100

0.703
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.566
  ssb Glaesserella parasuis strain SC1401

35.294

100

0.377
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

60.571

0.371