Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U8P28_RS01095 Genome accession   NZ_CP141100
Coordinates   245002..245538 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain KE40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 240002..250538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8P28_RS01075 (U8P28_01075) aphA 240290..241003 (+) 714 WP_001226928.1 acid phosphatase AphA -
  U8P28_RS01080 (U8P28_01080) yjbQ 241114..241530 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  U8P28_RS01085 (U8P28_01085) yjbR 241534..241890 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  U8P28_RS01090 (U8P28_01090) uvrA 241925..244747 (-) 2823 WP_115783831.1 excinuclease ABC subunit UvrA Machinery gene
  U8P28_RS01095 (U8P28_01095) ssb 245002..245538 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  U8P28_RS01100 (U8P28_01100) yjcB 245637..245918 (-) 282 WP_001295689.1 YjcB family protein -
  U8P28_RS01105 (U8P28_01105) pdeC 246347..247930 (+) 1584 WP_000019571.1 c-di-GMP phosphodiesterase PdeC -
  U8P28_RS01110 (U8P28_01110) soxS 247936..248259 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  U8P28_RS01115 (U8P28_01115) soxR 248345..248809 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=836209 U8P28_RS01095 WP_000168305.1 245002..245538(+) (ssb) [Escherichia coli strain KE40]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=836209 U8P28_RS01095 WP_000168305.1 245002..245538(+) (ssb) [Escherichia coli strain KE40]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489