Detailed information NTG0836209

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: QNH27_RS17700
• Genome accession: NZ_CP126105
• Coordinates: 3581564..3582709 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain NJ26
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3576564..3587709

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QNH27_RS17680 (QNH27_17680)	-	3577461..3577889 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
QNH27_RS17685 (QNH27_17685)	-	3578043..3578555 (+)	513	Protein_3425	bacteriocin biosynthesis protein AlbG	-
QNH27_RS17690 (QNH27_17690)	-	3578562..3579938 (-)	1377	WP_032875890.1	YncE family protein	-
QNH27_RS17695 (QNH27_17695)	-	3579978..3581333 (-)	1356	WP_032875887.1	YncE family protein	-
QNH27_RS17700 (QNH27_17700)	rapF	3581564..3582709 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
QNH27_RS17705 (QNH27_17705)	-	3582693..3582812 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
QNH27_RS17710 (QNH27_17710)	speB	3582935..3583807 (-)	873	WP_032875884.1	agmatinase	-
QNH27_RS17715 (QNH27_17715)	speE	3583866..3584696 (-)	831	WP_003151052.1	spermidine synthase	-
QNH27_RS17720 (QNH27_17720)	-	3584896..3586968 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
QNH27_RS17725 (QNH27_17725)	-	3586993..3587426 (-)	434	Protein_3433	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=836209 QNH27_RS17700 WP_074534220.1 3581564..3582709(+) (rapF) [Bacillus velezensis strain NJ26]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=836209 QNH27_RS17700 WP_074534220.1 3581564..3582709(+) (rapF) [Bacillus velezensis strain NJ26]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541