Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U8P30_RS15935 Genome accession   NZ_CP141084
Coordinates   3360199..3360735 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain KE48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3355199..3365735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8P30_RS15915 (U8P30_15915) aphA 3355488..3356201 (+) 714 WP_001226933.1 acid phosphatase AphA -
  U8P30_RS15920 (U8P30_15920) yjbQ 3356312..3356728 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  U8P30_RS15925 (U8P30_15925) yjbR 3356732..3357088 (+) 357 WP_000155661.1 MmcQ/YjbR family DNA-binding protein -
  U8P30_RS15930 (U8P30_15930) uvrA 3357123..3359945 (-) 2823 WP_000357764.1 excinuclease ABC subunit UvrA Machinery gene
  U8P30_RS15935 (U8P30_15935) ssb 3360199..3360735 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  U8P30_RS15940 (U8P30_15940) yjcB 3360834..3361115 (-) 282 WP_001304710.1 YjcB family protein -
  U8P30_RS15945 (U8P30_15945) pdeC 3361544..3363097 (+) 1554 WP_187206391.1 c-di-GMP phosphodiesterase PdeC -
  U8P30_RS15950 (U8P30_15950) soxS 3363133..3363456 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  U8P30_RS15955 (U8P30_15955) soxR 3363542..3364006 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=836097 U8P30_RS15935 WP_000168305.1 3360199..3360735(+) (ssb) [Escherichia coli strain KE48]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=836097 U8P30_RS15935 WP_000168305.1 3360199..3360735(+) (ssb) [Escherichia coli strain KE48]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489