Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH44_RS25095 Genome accession   NZ_CP126102
Coordinates   4985106..4985618 (-) Length   170 a.a.
NCBI ID   WP_048010214.1    Uniprot ID   A0AA46P374
Organism   Cytobacillus firmus strain LN5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4980106..4990618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH44_RS25075 (QNH44_25075) rplI 4981222..4981668 (-) 447 WP_035328283.1 50S ribosomal protein L9 -
  QNH44_RS25080 (QNH44_25080) - 4981665..4983638 (-) 1974 WP_227888339.1 DHH family phosphoesterase -
  QNH44_RS25085 (QNH44_25085) - 4983670..4984605 (-) 936 WP_283913862.1 YybS family protein -
  QNH44_RS25090 (QNH44_25090) rpsR 4984808..4985047 (-) 240 WP_009332461.1 30S ribosomal protein S18 -
  QNH44_RS25095 (QNH44_25095) ssbA 4985106..4985618 (-) 513 WP_048010214.1 single-stranded DNA-binding protein Machinery gene
  QNH44_RS25100 (QNH44_25100) rpsF 4985654..4985941 (-) 288 WP_048010213.1 30S ribosomal protein S6 -
  QNH44_RS25105 (QNH44_25105) ychF 4986413..4987513 (-) 1101 WP_048010212.1 redox-regulated ATPase YchF -
  QNH44_RS25110 (QNH44_25110) - 4987677..4989671 (-) 1995 WP_048010211.1 molybdopterin-dependent oxidoreductase -
  QNH44_RS25115 (QNH44_25115) - 4989699..4989896 (-) 198 WP_035328295.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18860.59 Da        Isoelectric Point: 4.7827

>NTDB_id=836020 QNH44_RS25095 WP_048010214.1 4985106..4985618(-) (ssbA) [Cytobacillus firmus strain LN5]
MMNRVVLVGRLTKDPDLRYTPNGVPVASFTLAVNRAFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQSR
SYEGQDGKRVYVTEVQAESVQFLEPKNSSGGQGGGNPNYGGPRDQDFPFGNNSNQNQRQDNRNQGNYTRVDQDPFANDGQ
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=836020 QNH44_RS25095 WP_048010214.1 4985106..4985618(-) (ssbA) [Cytobacillus firmus strain LN5]
ATGATGAACCGTGTTGTTCTTGTCGGACGTTTGACAAAGGATCCTGATTTGCGGTATACCCCGAACGGAGTTCCTGTCGC
TTCATTCACTCTTGCCGTGAATCGTGCTTTTACGAATCAGCAAGGTGAGCGGGAGGCAGACTTTATCAACTGTGTGGTAT
GGAGAAAGCCAGCTGAAAACGTAGCGAATTTCCTTAAAAAAGGAAGTCTTGCAGGTGTAGATGGCCGGATTCAATCCCGC
AGCTATGAAGGCCAGGATGGAAAGCGCGTTTACGTGACAGAAGTCCAGGCTGAGAGTGTGCAATTCCTTGAGCCGAAGAA
TAGTTCTGGCGGCCAGGGCGGCGGTAATCCGAACTACGGCGGTCCAAGAGATCAGGATTTCCCATTTGGAAATAACAGCA
ATCAGAATCAACGACAGGATAATCGTAATCAGGGCAACTACACTCGCGTGGATCAGGACCCATTCGCAAATGACGGCCAA
ATCGACATTTCCGATGACGACCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.787

100

0.741
  ssb Latilactobacillus sakei subsp. sakei 23K

55.114

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.353

0.4
  ssb Glaesserella parasuis strain SC1401

35.393

100

0.371