Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U8P26_RS03535 Genome accession   NZ_CP141083
Coordinates   604367..604903 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain KE50     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 599367..609903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8P26_RS03515 (U8P26_03515) soxR 601096..601560 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  U8P26_RS03520 (U8P26_03520) soxS 601646..601969 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  U8P26_RS03525 (U8P26_03525) pdeC 601972..603558 (-) 1587 WP_322882480.1 c-di-GMP phosphodiesterase PdeC -
  U8P26_RS03530 (U8P26_03530) yjcB 603987..604268 (+) 282 WP_001296643.1 YjcB family protein -
  U8P26_RS03535 (U8P26_03535) ssb 604367..604903 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  U8P26_RS03540 (U8P26_03540) uvrA 605158..607980 (+) 2823 WP_000357755.1 excinuclease ABC subunit UvrA Machinery gene
  U8P26_RS03545 (U8P26_03545) yjbR 608015..608371 (-) 357 WP_000153726.1 MmcQ/YjbR family DNA-binding protein -
  U8P26_RS03550 (U8P26_03550) yjbQ 608375..608791 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  U8P26_RS03555 (U8P26_03555) aphA 608902..609615 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=835948 U8P26_RS03535 WP_000168305.1 604367..604903(-) (ssb) [Escherichia coli strain KE50]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=835948 U8P26_RS03535 WP_000168305.1 604367..604903(-) (ssb) [Escherichia coli strain KE50]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489