Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QNH41_RS18785 Genome accession   NZ_CP126100
Coordinates   3639682..3640371 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus halotolerans strain LN2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3634682..3645371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH41_RS18750 (QNH41_18750) flgN 3634864..3635346 (-) 483 WP_283912626.1 flagellar protein FlgN -
  QNH41_RS18755 (QNH41_18755) flgM 3635361..3635627 (-) 267 WP_024123025.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNH41_RS18760 (QNH41_18760) - 3635707..3636126 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  QNH41_RS18765 (QNH41_18765) comFC 3636200..3636922 (-) 723 WP_127696434.1 phosphoribosyltransferase family protein Machinery gene
  QNH41_RS18770 (QNH41_18770) - 3636886..3637182 (-) 297 WP_024123028.1 competence protein ComFB -
  QNH41_RS18775 (QNH41_18775) comFA 3637239..3638633 (-) 1395 WP_106019638.1 ATP-dependent helicase ComFA Machinery gene
  QNH41_RS18780 (QNH41_18780) - 3638740..3639585 (-) 846 WP_106019639.1 DegV family protein -
  QNH41_RS18785 (QNH41_18785) degU 3639682..3640371 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QNH41_RS18790 (QNH41_18790) degS 3640454..3641611 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  QNH41_RS18795 (QNH41_18795) - 3641828..3642481 (+) 654 WP_283912627.1 YigZ family protein -
  QNH41_RS18800 (QNH41_18800) - 3642481..3643659 (+) 1179 WP_024123032.1 LCP family protein -
  QNH41_RS18805 (QNH41_18805) - 3643731..3644807 (-) 1077 WP_151174552.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=835921 QNH41_RS18785 WP_003219701.1 3639682..3640371(-) (degU) [Bacillus halotolerans strain LN2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=835921 QNH41_RS18785 WP_003219701.1 3639682..3640371(-) (degU) [Bacillus halotolerans strain LN2]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1