Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QNH41_RS18765 Genome accession   NZ_CP126100
Coordinates   3636200..3636922 (-) Length   240 a.a.
NCBI ID   WP_127696434.1    Uniprot ID   -
Organism   Bacillus halotolerans strain LN2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3631200..3641922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH41_RS18730 (QNH41_18730) fliW 3631342..3631773 (-) 432 WP_024123020.1 flagellar assembly protein FliW -
  QNH41_RS18735 (QNH41_18735) - 3631794..3632369 (-) 576 WP_283912624.1 DUF6470 family protein -
  QNH41_RS18740 (QNH41_18740) flgL 3632416..3633312 (-) 897 WP_202647736.1 flagellar hook-associated protein FlgL -
  QNH41_RS18745 (QNH41_18745) flgK 3633322..3634845 (-) 1524 WP_283912625.1 flagellar hook-associated protein FlgK -
  QNH41_RS18750 (QNH41_18750) flgN 3634864..3635346 (-) 483 WP_283912626.1 flagellar protein FlgN -
  QNH41_RS18755 (QNH41_18755) flgM 3635361..3635627 (-) 267 WP_024123025.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNH41_RS18760 (QNH41_18760) - 3635707..3636126 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  QNH41_RS18765 (QNH41_18765) comFC 3636200..3636922 (-) 723 WP_127696434.1 phosphoribosyltransferase family protein Machinery gene
  QNH41_RS18770 (QNH41_18770) - 3636886..3637182 (-) 297 WP_024123028.1 competence protein ComFB -
  QNH41_RS18775 (QNH41_18775) comFA 3637239..3638633 (-) 1395 WP_106019638.1 ATP-dependent helicase ComFA Machinery gene
  QNH41_RS18780 (QNH41_18780) - 3638740..3639585 (-) 846 WP_106019639.1 DegV family protein -
  QNH41_RS18785 (QNH41_18785) degU 3639682..3640371 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QNH41_RS18790 (QNH41_18790) degS 3640454..3641611 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27083.34 Da        Isoelectric Point: 8.6986

>NTDB_id=835919 QNH41_RS18765 WP_127696434.1 3636200..3636922(-) (comFC) [Bacillus halotolerans strain LN2]
MRNETGGGSKKLICLLCDSQFSQAVSWCSLFLLKPDDRVCQFCRNKLQIIKGAICPLCGRPQTAHEVCADCEAWKSRIDD
GLRLSQNRSVYLYNDMMKETLARMKFRGDAAIISAFKNDFSSEFSAVYPDKRLVLVPIPLSEERKAERGFNQSQMLAECL
NRPILNPLIRLNNEKQSKKKKTERLLSEHVFETKNSSVEGMDIVLIDDLYTTGATLHYAARCLLEKGKAGSVSSFTLVRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=835919 QNH41_RS18765 WP_127696434.1 3636200..3636922(-) (comFC) [Bacillus halotolerans strain LN2]
ATGCGAAACGAGACAGGAGGAGGCTCTAAAAAACTGATCTGTCTATTATGTGATTCACAATTTTCTCAAGCTGTTTCATG
GTGCTCACTATTCTTATTAAAACCTGACGACAGGGTCTGTCAGTTCTGCAGAAACAAATTACAGATCATCAAAGGGGCTA
TCTGTCCGCTTTGCGGCAGGCCTCAAACCGCTCATGAAGTGTGCGCGGATTGCGAGGCATGGAAATCAAGAATAGATGAC
GGCTTAAGGCTCAGTCAAAACCGTTCTGTTTACTTATATAATGACATGATGAAAGAAACGCTCGCCCGAATGAAATTCAG
GGGAGATGCAGCGATAATAAGCGCTTTTAAAAATGACTTTTCCTCAGAATTCTCTGCTGTCTATCCAGATAAACGCCTTG
TGCTCGTTCCCATTCCGTTAAGCGAAGAACGGAAAGCAGAACGCGGCTTTAACCAGTCACAAATGCTTGCTGAATGCTTA
AACCGGCCCATCCTCAATCCTCTCATCCGCCTGAATAATGAAAAGCAGTCTAAGAAAAAGAAAACGGAGCGCCTGCTTTC
AGAGCATGTTTTTGAAACAAAAAACAGCTCCGTTGAGGGTATGGATATCGTTTTAATCGACGATCTTTATACTACGGGCG
CCACTTTGCACTATGCTGCCCGCTGTTTATTGGAGAAAGGCAAAGCTGGTTCTGTGTCATCTTTTACCTTAGTGAGAAGC
TAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(184-238)

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

75.833

100

0.758