Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QNH41_RS18775 Genome accession   NZ_CP126100
Coordinates   3637239..3638633 (-) Length   464 a.a.
NCBI ID   WP_106019638.1    Uniprot ID   -
Organism   Bacillus halotolerans strain LN2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3632239..3643633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH41_RS18740 (QNH41_18740) flgL 3632416..3633312 (-) 897 WP_202647736.1 flagellar hook-associated protein FlgL -
  QNH41_RS18745 (QNH41_18745) flgK 3633322..3634845 (-) 1524 WP_283912625.1 flagellar hook-associated protein FlgK -
  QNH41_RS18750 (QNH41_18750) flgN 3634864..3635346 (-) 483 WP_283912626.1 flagellar protein FlgN -
  QNH41_RS18755 (QNH41_18755) flgM 3635361..3635627 (-) 267 WP_024123025.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNH41_RS18760 (QNH41_18760) - 3635707..3636126 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  QNH41_RS18765 (QNH41_18765) comFC 3636200..3636922 (-) 723 WP_127696434.1 phosphoribosyltransferase family protein Machinery gene
  QNH41_RS18770 (QNH41_18770) - 3636886..3637182 (-) 297 WP_024123028.1 competence protein ComFB -
  QNH41_RS18775 (QNH41_18775) comFA 3637239..3638633 (-) 1395 WP_106019638.1 ATP-dependent helicase ComFA Machinery gene
  QNH41_RS18780 (QNH41_18780) - 3638740..3639585 (-) 846 WP_106019639.1 DegV family protein -
  QNH41_RS18785 (QNH41_18785) degU 3639682..3640371 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QNH41_RS18790 (QNH41_18790) degS 3640454..3641611 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  QNH41_RS18795 (QNH41_18795) - 3641828..3642481 (+) 654 WP_283912627.1 YigZ family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52784.87 Da        Isoelectric Point: 9.7189

>NTDB_id=835920 QNH41_RS18775 WP_106019638.1 3637239..3638633(-) (comFA) [Bacillus halotolerans strain LN2]
MQTKTSESNSPFSKELQQQLQGRHLLKTEIPFSDEIIDWHIEHGYISAEESISKNKWGYRCNRCGQNDQQYFSSYHSSGE
DKVYCRSCVMMGRVSEDISLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFPG
IESALNLRLRVCIATPRTDVVLELAPRLKAAFQGADISVLYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLTRNKIPNAVK
RWIEQHVKEGKPVFLFVPSISVLVKAASCFKNMNYRTAAVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=835920 QNH41_RS18775 WP_106019638.1 3637239..3638633(-) (comFA) [Bacillus halotolerans strain LN2]
ATGCAGACTAAGACATCAGAATCGAACAGCCCATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTTAA
AACAGAAATCCCATTTTCTGACGAGATCATTGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGAGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATATTTCTTTATATTCCTGGTGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATCGGCATTAAATCTAAGACTGCGTGTTTGTATTGCGACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
ACTGAAGGCTGCATTTCAGGGTGCTGATATTTCAGTTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGTTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGCGCAAC
ACCTCCTAAAGAATTAAAAAGAAAAACGTATAAAGGTGAGTTAAAATCCGTTCGCATACCGGCCAGATACCATCGGAAGC
CATTGCCTGAACCGCGCTTTCAGTGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAACAAAATCCCAAATGCGGTAAAA
AGATGGATAGAACAGCATGTGAAAGAAGGAAAGCCCGTTTTTTTATTTGTTCCTTCCATTTCTGTTCTGGTAAAAGCTGC
TTCCTGTTTTAAAAACATGAATTATCGAACAGCGGCTGTACATGCGGAAGATAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATTGAGGCAAGAAAACATATAAAAATAATGA
ATGAATTGGCTTTAAAAAATAAATTGATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(323-424)

Type III restriction enzyme, res subunit (ResIII)

(121-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.061

98.707

0.83