Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNK06_RS22320 Genome accession   NZ_CP126097
Coordinates   4220218..4220736 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain KF24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4215218..4225736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS22290 (QNK06_22290) yyaJ 4215724..4217079 (+) 1356 WP_029318525.1 MFS transporter -
  QNK06_RS22295 (QNK06_22295) maa 4217113..4217667 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  QNK06_RS22300 (QNK06_22300) yyaH 4217683..4218063 (-) 381 WP_283933978.1 VOC family protein -
  QNK06_RS22305 (QNK06_22305) ccpB 4218119..4219054 (-) 936 WP_125121015.1 transcriptional regulator CcpB -
  QNK06_RS22310 (QNK06_22310) xth 4219112..4219870 (-) 759 WP_064671669.1 exodeoxyribonuclease III -
  QNK06_RS22315 (QNK06_22315) rpsR 4219935..4220174 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  QNK06_RS22320 (QNK06_22320) ssbA 4220218..4220736 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  QNK06_RS22325 (QNK06_22325) rpsF 4220777..4221064 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  QNK06_RS22330 (QNK06_22330) ychF 4221175..4222275 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  QNK06_RS22335 (QNK06_22335) yyaE 4222402..4224405 (-) 2004 WP_283933979.1 molybdopterin-dependent oxidoreductase -
  QNK06_RS22340 (QNK06_22340) yyzM 4224456..4224662 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=835754 QNK06_RS22320 WP_003219228.1 4220218..4220736(-) (ssbA) [Bacillus subtilis strain KF24]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=835754 QNK06_RS22320 WP_003219228.1 4220218..4220736(-) (ssbA) [Bacillus subtilis strain KF24]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378