Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QNH34_RS11555 Genome accession   NZ_CP126096
Coordinates   2259117..2259410 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain G6S2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2254117..2264410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH34_RS11505 (QNH34_11505) sinR 2254275..2254610 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  QNH34_RS11510 (QNH34_11510) - 2254678..2255478 (-) 801 WP_008342195.1 TasA family protein -
  QNH34_RS11515 (QNH34_11515) - 2255537..2256109 (-) 573 WP_017357979.1 signal peptidase I -
  QNH34_RS11520 (QNH34_11520) tapA 2256159..2256686 (-) 528 WP_283933160.1 amyloid fiber anchoring/assembly protein TapA -
  QNH34_RS11525 (QNH34_11525) - 2256939..2257265 (+) 327 WP_039166025.1 DUF3889 domain-containing protein -
  QNH34_RS11530 (QNH34_11530) - 2257300..2257500 (-) 201 WP_060781188.1 YqzE family protein -
  QNH34_RS11535 (QNH34_11535) comGG 2257561..2257944 (-) 384 WP_058214152.1 competence type IV pilus minor pilin ComGG -
  QNH34_RS11540 (QNH34_11540) comGF 2257941..2258438 (-) 498 WP_283933161.1 competence type IV pilus minor pilin ComGF -
  QNH34_RS11545 (QNH34_11545) comGE 2258380..2258694 (-) 315 WP_283933162.1 competence type IV pilus minor pilin ComGE -
  QNH34_RS11550 (QNH34_11550) comGD 2258678..2259124 (-) 447 WP_283933163.1 competence type IV pilus minor pilin ComGD -
  QNH34_RS11555 (QNH34_11555) comGC 2259117..2259410 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  QNH34_RS11560 (QNH34_11560) comGB 2259427..2260467 (-) 1041 WP_073413946.1 competence type IV pilus assembly protein ComGB -
  QNH34_RS11565 (QNH34_11565) comGA 2260448..2261518 (-) 1071 WP_017357987.1 competence type IV pilus ATPase ComGA Machinery gene
  QNH34_RS11570 (QNH34_11570) - 2261975..2262847 (-) 873 WP_041506953.1 STAS domain-containing protein -
  QNH34_RS11580 (QNH34_11580) - 2263072..2263452 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QNH34_RS11585 (QNH34_11585) - 2263665..2263907 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=835649 QNH34_RS11555 WP_008342186.1 2259117..2259410(-) (comGC) [Bacillus altitudinis strain G6S2]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=835649 QNH34_RS11555 WP_008342186.1 2259117..2259410(-) (comGC) [Bacillus altitudinis strain G6S2]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATTACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGATGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACT
TGTCCGAATGGAAAGGCAATTTTCATTCAAAATGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392