Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QNH34_RS11565 Genome accession   NZ_CP126096
Coordinates   2260448..2261518 (-) Length   356 a.a.
NCBI ID   WP_017357987.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G6S2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2255448..2266518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH34_RS11515 (QNH34_11515) - 2255537..2256109 (-) 573 WP_017357979.1 signal peptidase I -
  QNH34_RS11520 (QNH34_11520) tapA 2256159..2256686 (-) 528 WP_283933160.1 amyloid fiber anchoring/assembly protein TapA -
  QNH34_RS11525 (QNH34_11525) - 2256939..2257265 (+) 327 WP_039166025.1 DUF3889 domain-containing protein -
  QNH34_RS11530 (QNH34_11530) - 2257300..2257500 (-) 201 WP_060781188.1 YqzE family protein -
  QNH34_RS11535 (QNH34_11535) comGG 2257561..2257944 (-) 384 WP_058214152.1 competence type IV pilus minor pilin ComGG -
  QNH34_RS11540 (QNH34_11540) comGF 2257941..2258438 (-) 498 WP_283933161.1 competence type IV pilus minor pilin ComGF -
  QNH34_RS11545 (QNH34_11545) comGE 2258380..2258694 (-) 315 WP_283933162.1 competence type IV pilus minor pilin ComGE -
  QNH34_RS11550 (QNH34_11550) comGD 2258678..2259124 (-) 447 WP_283933163.1 competence type IV pilus minor pilin ComGD -
  QNH34_RS11555 (QNH34_11555) comGC 2259117..2259410 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  QNH34_RS11560 (QNH34_11560) comGB 2259427..2260467 (-) 1041 WP_073413946.1 competence type IV pilus assembly protein ComGB -
  QNH34_RS11565 (QNH34_11565) comGA 2260448..2261518 (-) 1071 WP_017357987.1 competence type IV pilus ATPase ComGA Machinery gene
  QNH34_RS11570 (QNH34_11570) - 2261975..2262847 (-) 873 WP_041506953.1 STAS domain-containing protein -
  QNH34_RS11580 (QNH34_11580) - 2263072..2263452 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QNH34_RS11585 (QNH34_11585) - 2263665..2263907 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  QNH34_RS11590 (QNH34_11590) - 2263956..2264594 (-) 639 WP_017357989.1 MBL fold metallo-hydrolase -
  QNH34_RS11595 (QNH34_11595) - 2264755..2264928 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  QNH34_RS11600 (QNH34_11600) - 2264953..2265267 (-) 315 WP_017367597.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40339.70 Da        Isoelectric Point: 9.0449

>NTDB_id=835650 QNH34_RS11565 WP_017357987.1 2260448..2261518(-) (comGA) [Bacillus altitudinis strain G6S2]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=835650 QNH34_RS11565 WP_017357987.1 2260448..2261518(-) (comGA) [Bacillus altitudinis strain G6S2]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGCTAGAAGAGGCGTGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGATCATTGGCT
GTGATGCTAAGACGCGGTCAAGTGTTTGTTCGGCTCTCTACACTACCAACTGTAAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACAGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGGAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGTTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCAGAAACAGCGAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACACTGCAC
GCAAAGAATGCAAAAGGAGCTCTTTATCGAATGCTCGAATTTGGTGTGACGATGAATGAACTCGAACAAACAATGGTTGC
CATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGATGGGTTTATGAAGAAGCGAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

65.254

99.438

0.649