Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QNH34_RS11505 Genome accession   NZ_CP126096
Coordinates   2254275..2254610 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G6S2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2249275..2259610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH34_RS11485 (QNH34_11485) gcvT 2249751..2250848 (-) 1098 WP_203143450.1 glycine cleavage system aminomethyltransferase GcvT -
  QNH34_RS11490 (QNH34_11490) - 2251410..2253080 (+) 1671 WP_017357976.1 SNF2-related protein -
  QNH34_RS11495 (QNH34_11495) - 2253095..2253892 (+) 798 WP_216894671.1 YqhG family protein -
  QNH34_RS11500 (QNH34_11500) - 2254077..2254241 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  QNH34_RS11505 (QNH34_11505) sinR 2254275..2254610 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  QNH34_RS11510 (QNH34_11510) - 2254678..2255478 (-) 801 WP_008342195.1 TasA family protein -
  QNH34_RS11515 (QNH34_11515) - 2255537..2256109 (-) 573 WP_017357979.1 signal peptidase I -
  QNH34_RS11520 (QNH34_11520) tapA 2256159..2256686 (-) 528 WP_283933160.1 amyloid fiber anchoring/assembly protein TapA -
  QNH34_RS11525 (QNH34_11525) - 2256939..2257265 (+) 327 WP_039166025.1 DUF3889 domain-containing protein -
  QNH34_RS11530 (QNH34_11530) - 2257300..2257500 (-) 201 WP_060781188.1 YqzE family protein -
  QNH34_RS11535 (QNH34_11535) comGG 2257561..2257944 (-) 384 WP_058214152.1 competence type IV pilus minor pilin ComGG -
  QNH34_RS11540 (QNH34_11540) comGF 2257941..2258438 (-) 498 WP_283933161.1 competence type IV pilus minor pilin ComGF -
  QNH34_RS11545 (QNH34_11545) comGE 2258380..2258694 (-) 315 WP_283933162.1 competence type IV pilus minor pilin ComGE -
  QNH34_RS11550 (QNH34_11550) comGD 2258678..2259124 (-) 447 WP_283933163.1 competence type IV pilus minor pilin ComGD -
  QNH34_RS11555 (QNH34_11555) comGC 2259117..2259410 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=835648 QNH34_RS11505 WP_017357978.1 2254275..2254610(+) (sinR) [Bacillus altitudinis strain G6S2]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=835648 QNH34_RS11505 WP_017357978.1 2254275..2254610(+) (sinR) [Bacillus altitudinis strain G6S2]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928