Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNH40_RS08875 Genome accession   NZ_CP126086
Coordinates   1756283..1756663 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CES-OCA-19     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1751283..1761663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH40_RS08865 (QNH40_08865) - 1753006..1753914 (+) 909 WP_048001486.1 trypsin-like serine protease -
  QNH40_RS08870 (QNH40_08870) - 1754061..1756055 (+) 1995 WP_283931344.1 glycosyltransferase family 39 protein -
  QNH40_RS08875 (QNH40_08875) nucA/comI 1756283..1756663 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QNH40_RS08880 (QNH40_08880) - 1756807..1757655 (+) 849 WP_017367323.1 STAS domain-containing protein -
  QNH40_RS08885 (QNH40_08885) - 1757688..1758230 (-) 543 WP_017367324.1 IseA DL-endopeptidase inhibitor family protein -
  QNH40_RS08890 (QNH40_08890) - 1758527..1758970 (+) 444 WP_008343821.1 hypothetical protein -
  QNH40_RS08895 (QNH40_08895) lexA 1759018..1759638 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  QNH40_RS08900 (QNH40_08900) yneA 1759798..1760109 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  QNH40_RS08905 (QNH40_08905) - 1760127..1760774 (+) 648 WP_025207396.1 recombinase family protein -
  QNH40_RS08910 (QNH40_08910) - 1760844..1761074 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=835065 QNH40_RS08875 WP_224559893.1 1756283..1756663(+) (nucA/comI) [Bacillus altitudinis strain CES-OCA-19]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=835065 QNH40_RS08875 WP_224559893.1 1756283..1756663(+) (nucA/comI) [Bacillus altitudinis strain CES-OCA-19]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGACACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGTGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556