Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QNH40_RS10300 Genome accession   NZ_CP126086
Coordinates   2033069..2033704 (+) Length   211 a.a.
NCBI ID   WP_019744016.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CES-OCA-19     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2028069..2038704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH40_RS10260 (QNH40_10260) - 2028231..2029349 (+) 1119 WP_025207530.1 NADH-dependent flavin oxidoreductase -
  QNH40_RS10265 (QNH40_10265) - 2029401..2029907 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  QNH40_RS10270 (QNH40_10270) - 2030076..2030495 (+) 420 WP_017359728.1 Hsp20/alpha crystallin family protein -
  QNH40_RS10275 (QNH40_10275) - 2030517..2030969 (-) 453 WP_017359729.1 YppG family protein -
  QNH40_RS10280 (QNH40_10280) - 2031078..2031458 (-) 381 WP_231493314.1 YppE family protein -
  QNH40_RS10285 (QNH40_10285) - 2031508..2031741 (-) 234 WP_231131595.1 DUF5446 family protein -
  QNH40_RS10290 (QNH40_10290) sspM 2031938..2032042 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  QNH40_RS10295 (QNH40_10295) - 2032066..2033022 (-) 957 WP_144610237.1 DUF2515 domain-containing protein -
  QNH40_RS10300 (QNH40_10300) recU 2033069..2033704 (+) 636 WP_019744016.1 Holliday junction resolvase RecU Machinery gene
  QNH40_RS10305 (QNH40_10305) - 2033724..2036411 (+) 2688 WP_019744017.1 PBP1A family penicillin-binding protein -
  QNH40_RS10310 (QNH40_10310) - 2036447..2036956 (-) 510 WP_019744018.1 YpoC family protein -
  QNH40_RS10315 (QNH40_10315) nth 2036953..2037615 (-) 663 WP_008344602.1 endonuclease III -
  QNH40_RS10320 (QNH40_10320) - 2037633..2038337 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24322.62 Da        Isoelectric Point: 9.7583

>NTDB_id=835066 QNH40_RS10300 WP_019744016.1 2033069..2033704(+) (recU) [Bacillus altitudinis strain CES-OCA-19]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHNHQIEHMKQVEKQGGICFVIISAFGSVYYLSASDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESKHHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=835066 QNH40_RS10300 WP_019744016.1 2033069..2033704(+) (recU) [Bacillus altitudinis strain CES-OCA-19]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACAACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTTCTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGCCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCATCATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.277

95.735

0.692