Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH40_RS11255 Genome accession   NZ_CP126086
Coordinates   2207083..2208816 (-) Length   577 a.a.
NCBI ID   WP_113747197.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CES-OCA-19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2202083..2213816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH40_RS11240 (QNH40_11240) - 2202970..2204070 (-) 1101 WP_019743381.1 Rap family tetratricopeptide repeat protein -
  QNH40_RS11245 (QNH40_11245) spo0A 2204520..2205323 (-) 804 WP_008342226.1 sporulation transcription factor Spo0A Regulator
  QNH40_RS11250 (QNH40_11250) spoIVB 2205607..2206884 (-) 1278 WP_113747198.1 SpoIVB peptidase -
  QNH40_RS11255 (QNH40_11255) recN 2207083..2208816 (-) 1734 WP_113747197.1 DNA repair protein RecN Machinery gene
  QNH40_RS11260 (QNH40_11260) argR 2208851..2209300 (-) 450 WP_007501163.1 transcriptional regulator ArgR -
  QNH40_RS11265 (QNH40_11265) - 2209462..2210316 (-) 855 WP_007501164.1 TlyA family RNA methyltransferase -
  QNH40_RS11270 (QNH40_11270) dxs 2210313..2212214 (-) 1902 WP_007501165.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH40_RS11275 (QNH40_11275) - 2212366..2213256 (-) 891 WP_046343947.1 polyprenyl synthetase family protein -
  QNH40_RS11280 (QNH40_11280) - 2213246..2213506 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64576.48 Da        Isoelectric Point: 4.7121

>NTDB_id=835068 QNH40_RS11255 WP_113747197.1 2207083..2208816(-) (recN) [Bacillus altitudinis strain CES-OCA-19]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINQSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALS
QYQEAYDQYMKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNFEKIFSSLQNAYNALRNE
QGGLDWVGMASSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAISRDALLEALNVSELRKKWAKKLAKQIQAELKDLYMEKSSFDTAFTI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRAKAGRTMTNVKPLSDDEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=835068 QNH40_RS11255 WP_113747197.1 2207083..2208816(-) (recN) [Bacillus altitudinis strain CES-OCA-19]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAGGAGTTAACGGTTTCGTTTGAAAAAGGACTCACAGTTCT
AACAGGGGAAACAGGTGCCGGAAAATCAATCATGATTGACGCTGTCTCACTTCTTGTAGGGGGAAGAGGATCATCCGAAT
TTGTCCGTTATGGCGAAAAAAAAGCAGAGCTTGAAGGTCTTTTTCTTGTACCAGCAGATCATCCTGTATTTGCCCTTTGT
GAGGAGCAAGGAATTGATGCATCTGATGAAATGATGATTCTTCGCCGTGATATCAATCAAAGCGGGAAAAGCATTTGCCG
CATTAATGGTAAGCTTGTCACCATCTCGCTTTTAAGAGAAGTTGGCCGGCTTTTGCTTGATATACATGGACAGCACGATA
ATCAGCTGCTCATGGAGGATGAAAATCATTTGCATTTGCTTGATCAATTTGGAGCAGAAGAAATTGCACCTGCTCTCTCG
CAGTATCAAGAAGCGTATGATCAATATATGAAGACAGCGCAAAAGCTCAAACAGCTGTCTGAAAATGAACAGGAAATGGT
TCACCGGTTAGACTTATTGCAATTTCAGCTGGAAGAGATTGAAGCGGCACAATTAGAGCCTGGAGAAGATGAGAAGCTTC
AAGAGGAACGTCATCAAATTAGCAATTTTGAAAAAATCTTTTCCTCGCTTCAAAACGCATATAATGCTCTGCGTAATGAG
CAGGGAGGACTTGATTGGGTTGGAATGGCTTCAAGCGAGCTTGAGCAAGTTTCTGAGATCAACGACGATCTGAAAAAGCT
CTCTGAGCAAGTGTCAAACTCCTATTATTTATTAGAAGATTCTACTTTTCAAATGCGCAGCATGCTTGATCAATTAGAAT
TTGACCCAGCCCGTCTTGATTTTATTGAGTCTAGGTTAAATGAGATGAAGCAGCTGAAGCGAAAGTACGGCACAACCGTT
GAGGAAATTTTAGAATATGCGGCTAAGATTGAAGAGGAGATAGACCAAATCCAAAATCGAGACAGCCATTTGCAGACACT
TAAAAACAAACTTGACGCGATAAGCCGGGATGCATTGCTTGAAGCGCTCAACGTGTCAGAGCTCCGTAAAAAATGGGCGA
AAAAACTGGCGAAGCAAATTCAAGCTGAATTGAAGGATTTATATATGGAGAAGTCTTCTTTTGATACCGCTTTTACGATT
CGATATGCACCATTTGGCAGTACGGACTGCCCGCTTTTAGATGGAAAACCCGTACAGCTCGGGAAAAATGGCATAGATCA
AGCGCAATTTGTCATTTCTACAAATCCGGGTGAACCGATGAAATCTTTGTCAAAAGTAGCATCTGGAGGAGAAATTTCGC
GTGTCATGCTGGCAGTGAAAAGTATTTTCTCAGCGAAACAAGAAGTGACGTCCATTATATTTGATGAAGTGGATACGGGC
GTTAGCGGCAGAGTCGCACAAGCCATTGCTGAAAAAATTTATAAAGTAGCAGCAGGTTCACAAGTACTCTGTATTACCCA
TCTGCCGCAAGTCGCAGCAATGGCTGATACACATCTTTTTATTTCTAAACGCGCTAAAGCTGGTAGAACAATGACGAACG
TCAAACCACTAAGTGATGATGAAAAAGTGAGTGAAATCGGCCGAATGATTGCTGGTGTAGAAGTCACTGAGCTCACAAAA
CAGCATGCAAAAGAATTACTGCACCAAGCAAATGATGTCAAAACGACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.737

100

0.757